Array 1 6650-7741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFCJ010000037.1 Veillonella ratti strain MSK.5.1 DKNFJPCP_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6650 36 100.0 30 .................................... GATATGAGCGAACGAGGTAAATATTTAGTA 6716 36 100.0 30 .................................... AAATATGCCCTGATCTGTATCTGCCTCTAT 6782 36 100.0 30 .................................... GCAAGTCATTACACGATATACGCCCGCTTT 6848 36 100.0 30 .................................... AACATGGCGGCGCATGGCTTTGTGTATCAT 6914 36 100.0 30 .................................... ACGTAAGACAATCAACGGCGCCGGTGTTAG 6980 36 100.0 30 .................................... TACAAAAAGCCGTAATAAAGAAAGTAAAGG 7046 36 100.0 30 .................................... ATGGTTTTACGCGAACGCCTGAAATCATAA 7112 36 100.0 30 .................................... TACAATAAACCTTGTTGTTCCGTGTAGTTT 7178 36 100.0 30 .................................... AAGAGAAATCATGTATGACCTTGCTATGAA 7244 36 100.0 30 .................................... TATCCGTATAAGTCTGTTTGTTTTCGCTAT 7310 36 100.0 30 .................................... TATACTCATAAGACTCCCAACAAGTGAAAG 7376 36 100.0 30 .................................... AGGTCGGCAGGATTCGGCGCGAAATACTAC 7442 36 100.0 30 .................................... GCCAATTTTTGGCGGCAAGGATATAATATA 7508 36 100.0 30 .................................... TTTCTTTAACGATGATGAACTAAAGATGAT 7574 36 100.0 30 .................................... CCGGCATATGCTGTAATGTATAACAATGAC 7640 36 100.0 30 .................................... CGTACGCGCTAACGGAACGTTATGACAAAT 7706 36 91.7 0 .............................T.A.T.. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Left flank : TTCTATTGCGACGGAAGATGTAGGACTTTTATTTGAAATCAATCAAAAGATTCAAGAACTGTTTATGGCTTTAGAGGGGAGTTTAAGCCTTGATGTAACCTATAATAATCTCATAACTGCACAGGATATTGTAAAGTTGGGGAATTTTATGATTTGCGATGATGAATTTGACGATATTGGTAAAGTTATTAGTTTTATTGAAGTAGTCGTGGATTTGATCCGGCCAAAGTTATTAGTTATGCTCAATCTGCGTAAATTTATGACAAATAGTGAATTGGAATTATTTTTTGAGACAATTTTGTGTAAAAAAATACCTGTTTTTTGTATAGAAGGTAGTGATGCGGAAGAGATTTCAGTTGTTCAAGAATTAGAAGTATTATATACTTTAGATAAGGATTTATGCGTGTTTTAACTGACTGACTAGAATTACACCTGCCTCGTAAGCTGAAAAATCTCTCAAATCTTTAAATTCAGCATTTTGGGTAAAAATGCAATTTGGG # Right flank : TTCATTTGTCAATAAATAGTATGAAATATCCTCTCTTTTTATACTGATTTAATCAAAATTGTACATTCATATATCATCAGTTTTGTGCGTATGAGAGTATCATTTATAAGCTTTATTTCGGCTTTTCTGTAAAAGAGCCAATTTTAATAGTTGTATATACTATCGTGTTATTTGATGCTGTAAAGTATGTAAGTCTAGTAGTGGCGTTTGAGAGTAGTGTAGAGCTAGAGTGGTCTAATTAGTGTATAGGGATAAGTGTGCTTTATTCGTACTTATCTCTATACAATATCTCGTTTTCTAATATTCCTCACAAAAAAATGTAAAAAAATTCATTTTGCCTCTTGCACACAAATTAAAATCGTGCTATTATATTTAAGTACCTGAAACAACGGTATTGCGGCCCCGTGGTGTAGCGGTTAACATGTCGCCCTGTCACGGCGAAGATCGTCAGTTCAAATCTGATCGGGGTCGCCATTTTTTTTGCCTCAAAAAAATATTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //