Array 1 2962-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQL01000026.1 Bifidobacterium longum subsp. longum strain MCC10033 contig0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2961 36 100.0 28 .................................... CATTAACGACTATCAATAAAGTCCATAA 2897 36 100.0 28 .................................... CCATCCAGTCGAAACGCAACATGGCTCC 2833 36 100.0 28 .................................... ACCGCACGTGCAGGTATCCGCTGGGAGG 2769 36 100.0 28 .................................... AAAACGGCGAATACACGGCGACGATACT 2705 36 100.0 29 .................................... GGAACGCCGGAAGGCTGTTCTAGCGGCCG 2640 36 100.0 28 .................................... CGACCTGTACAAGGCCGGCGACCGCAAC 2576 36 100.0 28 .................................... CATACGTGCGCGGGCTCGATTTCACAAA 2512 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 2448 36 100.0 28 .................................... AATTCAACATCCTCGGAGAAGAAGCCGA 2384 36 100.0 28 .................................... TCACCCATCACATCGATTGGAACGGCAA 2320 36 100.0 28 .................................... TCACCCATCACATCGATTGGAACGGCAA 2256 36 100.0 28 .................................... GTGCTCTTATCATCAACAGCATTATCGG 2192 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 2127 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 2063 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 1999 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 1935 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 1871 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 1807 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 1743 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 1679 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 1615 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 1551 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 1487 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 1423 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 1359 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 1295 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGATGCC 1231 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 1166 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 1102 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 1038 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 974 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 909 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 844 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 780 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 716 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 651 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 587 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 523 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 459 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 395 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 331 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 267 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 203 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 138 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 46 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGGATTCAATTTGTAAGCGCAACGCTTGTGTTCGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 35362-35706 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQL01000028.1 Bifidobacterium longum subsp. longum strain MCC10033 contig0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 35362 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 35428 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [35434] 35512 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 35572 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [35620] 35620 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 35677 27 81.5 0 C.............C.....C....CG | GC,C [35694,35698] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGTGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCCTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 524-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQL01000050.1 Bifidobacterium longum subsp. longum strain MCC10033 contig0050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 523 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 458 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 394 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 329 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 265 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 201 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 137 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 73 36 88.9 0 ..............................TTG.A. | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 98.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CAGCTATGGTGTAGCCAACAACAAAAACAAA # Right flank : CCCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //