Array 1 130523-124931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUA010000001.1 Chryseobacterium sp. C-204 Seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 130522 47 91.5 30 CACA........................................... TCTACGTTTACTATCGAGTTTGGAATACCC 130445 47 100.0 30 ............................................... TCTACGTTTACTATCGAGTTTGGAATACCC 130368 47 100.0 30 ............................................... CTGATAGTACCAATATTCAGCGATTTCAGT 130291 47 100.0 30 ............................................... GGATAAATTGTGCGCTTACAGGCACTCTGT 130214 47 100.0 30 ............................................... AATCAAAAACCTTCAACCCAGAGAAAACTT 130137 47 100.0 30 ............................................... TTGCATTACTTTTTTTTTAGTATTCGGATT 130060 47 100.0 30 ............................................... ACCGAAAGTGTTAAAGATTATAACAATGCA 129983 47 100.0 30 ............................................... CGTGACAATTAAAGGCTGCTGATAAAATAG 129906 47 100.0 30 ............................................... CTGAATTGTTGCAAGAAATTGCGATCATTG 129829 47 100.0 30 ............................................... TGCTTTACTTCCTGAATCAAACTCTGTTAC 129752 47 100.0 30 ............................................... CTTACAAGGCTATGGCAATTGCAGAAGCTA 129675 47 100.0 30 ............................................... CTCCTTCAAAAATAGTCATTGGACGAGGCG 129598 47 100.0 30 ............................................... TCTTGTGGAGTAGGAATAAATTTATGACGG 129521 47 100.0 30 ............................................... CTTCTGCCATGCCATCATCTCCTCCAGTCA 129444 47 100.0 30 ............................................... CTCCGATTCCCCCGCCTAAACCACCTGCGT 129367 47 100.0 30 ............................................... ACAGTAGTTGGAAAGCAATTCAACTTATAC 129290 47 100.0 30 ............................................... TTAGACTATATGGTTATTCATGCAGTATTC 129213 47 100.0 30 ............................................... AAAGCAAGGTTACACGATTACGACTCTTCA 129136 47 100.0 30 ............................................... GGAATGACCTGTGTAATCACCTCTATTATC 129059 47 100.0 30 ............................................... TGACGAAAGTGGTGTCAATGCGCACAACCT 128982 47 100.0 30 ............................................... ATATAACTCTTTTTGTCTTGCAGTCGTTCT 128905 47 100.0 30 ............................................... GAACAACCGTTATGTGCTTATGTTGAGTTT 128828 47 100.0 30 ............................................... TACGGATGGCCCATTGCTTATTATTCTCCG 128751 47 100.0 30 ............................................... AACTAAATTAATTTTCACCATTAGAGAAGT 128674 47 100.0 30 ............................................... CGATAACGCAGCCTTACTTCATGCTACACA 128597 47 100.0 30 ............................................... ATATCATATCCCGTGTCATTTGGATGAACA 128520 47 100.0 30 ............................................... GACTGCACCATTTGAGAACTGGAGGAGCTT 128443 47 100.0 30 ............................................... AGGATTTAAGAAAGCAGATTTAGAAAGTAT 128366 47 100.0 30 ............................................... TCTTACAGGCTCGATCTATCAACACAGGGA 128289 47 100.0 30 ............................................... TTTGATAAGGATACGGCGAAGTATCGGAAG 128212 47 100.0 30 ............................................... CTGATACAAATGTAAGAATAAAAACAAATA 128135 47 100.0 30 ............................................... AAGCCCCCATGATATTCTGTCTAAGATTCT 128058 47 100.0 30 ............................................... AAGAGAGGATTTAGCTAAAAGAGAAATTGA 127981 47 100.0 30 ............................................... CGGAAATGATGTAAGTTACTACGCATCAGT 127904 47 100.0 30 ............................................... AAAACCATATCATACTTTACGCCCGGATTG 127827 47 100.0 30 ............................................... CATGTCTATTGCTTCCCACAGCAGCATAGG 127750 47 100.0 30 ............................................... AATGCTTTCCATCCTATAAGAGACTATTTA 127673 47 100.0 30 ............................................... TATCAGATCTTAACTCTGCTTTGGCTGCTT 127596 47 100.0 30 ............................................... TTATAGAGATGTACAGCCTCCGCCCATATC 127519 47 100.0 30 ............................................... TTCAATTCTACTACAAACAAACGTAATTGT 127442 47 100.0 30 ............................................... AGTTGAAAAATTTATGTCTTGGCTTGACAA 127365 47 100.0 30 ............................................... TTACAGAAACTGCTAAAGAAGAGGATTACG 127288 47 100.0 30 ............................................... CGGAAATGATGTAAGTTACTACGCATCAGT 127211 47 100.0 30 ............................................... TGGTGTAGGGAGATATGCACCTCTTAGTTA 127134 47 100.0 30 ............................................... TTTATAATTACCAGGAATTAAATTAGAATG 127057 47 100.0 30 ............................................... GAATATTATCTGAATAGTCTCCAACAGGCA 126980 47 100.0 30 ............................................... TCAATGAATTCAAACGACTCTGCTATATTG 126903 47 100.0 30 ............................................... GTTTTAGATTATGAGCAGCTCACTCTGGAA 126826 47 100.0 30 ............................................... AAATCTTAAACAATGCAAAACAAGTTTAAA 126749 47 100.0 30 ............................................... GTAAATGATTTTAATTTGTTAGCCTGAGAG 126672 47 100.0 30 ............................................... CAAATCTGGGAATTACATCTAATAATACCG 126595 47 100.0 30 ............................................... ATATCATATCCCGTGTCATTTGGATGGACA 126518 47 100.0 30 ............................................... CTTTATCATTAATACAGGAGCAATATGCTG 126441 47 100.0 30 ............................................... GACAAAAGATGCTTTTAAATCAAAAATCTA 126364 47 100.0 30 ............................................... ATACGGAGAGTATTAAAAATGCTTTCTCTG 126287 47 100.0 30 ............................................... GGTCACTAAGAATTATTGTGCAAAAATAGA 126210 47 100.0 30 ............................................... ATGATAGGTTCATCCCCTCCATAACCATTA 126133 47 100.0 30 ............................................... AAAAAATAAAGCCATGATACGATCTCTGTA 126056 47 100.0 30 ............................................... AAAGCCTTCTGGTTAGAGTGAATAGGGTTA 125979 47 100.0 30 ............................................... AAGAGAGGAATTAGCTAAAAGAGAAATAGA 125902 47 100.0 30 ............................................... TATCGTGATTCTTTTCAGTGATACCCGGTT 125825 47 100.0 30 ............................................... GAAAATGAGGACATTAATTAAATTTTTTAA 125748 47 100.0 30 ............................................... TTTCCAAGCCGAAGGATTGTCGGGCTTTCT 125671 47 100.0 30 ............................................... TTGATAACCCTAATTACAAGTATCTGATTA 125594 47 100.0 30 ............................................... GCTATTTGGGTAGTAGAGGAGCAGGGATTT 125517 47 100.0 30 ............................................... GAGTAATTCTAAAGGATCTAGAATAATTAT 125440 47 100.0 31 ............................................... TTCCAAAGGGCGTTTTCCGAATAGATCGAAG 125362 47 100.0 30 ............................................... TGTTGTTTCTGAAATTATTACTTTCATATT 125285 47 100.0 30 ............................................... ATAAATTCACGAACTTCGACAACTTCCAAA 125208 47 100.0 30 ............................................... CATGATCAGCTTTGTAAGAAATCACTTTGT 125131 47 100.0 30 ............................................... AATTCTATAAATGCAAAATCTCCAAATCCT 125054 47 100.0 30 ............................................... GTGCATCCGATTCTGATATAACAGATAAGT 124977 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 73 47 99.9 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Left flank : GATTCCGATCTTCATGACCGTGCAGACTGGCTCGATCCTGTCTATTGGTGCAGGAAGAGTATGCAAACGCGCTTTGTAAAACATCGTGTTCCTGTAAATCGGTACAAATATGCTTTGCCTATACAATATACCTCAGCAGGAAGCCAACATCTGGAATCTTATGCAGGTGAAGGTTGGTTAGCGGTGGGTGATGCAGCCTGTGCGTTTGATCCATTGTCCTCACATGGTATTGCTTTCGCTCTACGTAGTGGGATTGATGCGGGTATTACTGCCAAAAATGAACTGGAAGGTAATACAGAAGCCGGAAATCATTATGATCAAAACATCAGATTAGTTTTCAGTTTATATGAAAAACAACGTTCAATCCTCTATCAAAAAGAGACACGCTGGACTGACCATCAATATTGGGCAAGAAGACAACAAGAAGAAAATCAGCAATTGCTAATGACAATATAATTATATCACACTATTTATTTGAATGGTTTAGTAGTTCATTTACT # Right flank : CTCAAAATTTAACCCTCTGTTTTTCAGAGGGTTTATTTTGTTTTCAGGATTTAAAATTCAGAACAATTCGAGTTGTTGGAAGGTCGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAACTGCTTATCGGTAATGCACATAATGGCAACCTTTCCGGCTTTAGGAAGCATAAATTTTACTCTTTTGATATGAACTTCTGCATTTTCCCGGCTCGGACAGTGTCGTACATACATCGAAAACTGAAATAAAGTGAATCCGTCATCAATCAGTGCTTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTGTCGTAACGTTTGCAGCCCGACCTGAGTGGAGCTCTTTTTGCAGATTTTGGTGCTGGAAAAATGCGGTTGGAAATCTGCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATTACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //