Array 1 7376-5491 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVEO01000007.1 Listeria monocytogenes strain MQ140032 MQ140032_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7375 36 100.0 30 .................................... GCAACCATGGCGGAAGTAACAACTGTCATA 7309 36 100.0 30 .................................... GACTAGCAATATCTGAAACCGCTTCTCTAT 7243 36 100.0 30 .................................... TAATGATTTTAAGTATATTTGCTACATTGA 7177 36 100.0 30 .................................... TATATGATAAAGTATAAATATAAACAAAGG 7111 36 100.0 30 .................................... CATCTATTTGTTTTACTAAATCGTCGTATC 7045 36 100.0 30 .................................... ATAAAGATTGACTGGAAAGGTCCTAAAGAC 6979 36 100.0 30 .................................... AGACCGTCAAGCGTGGTGCGTACAAAATGT 6913 36 100.0 30 .................................... AAAGAAGCGGCTGTTTGATTTATATATCAG 6847 36 100.0 30 .................................... AACCGGAATGATTGGCGTTGAACCAGAAGG 6781 36 100.0 30 .................................... ATGAATTAATTGACGCACAGAACAGTTACG 6715 36 100.0 30 .................................... GGTTTCCTGCAAAGTTAACATCCGTTAAAT 6649 36 100.0 30 .................................... AACCTTACGAAAGATAACCGCATTAGCTTG 6583 36 100.0 30 .................................... CGTTTTTCCAAAGTCTGAATGCTCTTTCAT 6517 36 100.0 30 .................................... TAAAATCCGAAACTAGTGGGCTTGCTGTGT 6451 36 100.0 30 .................................... TTGCATAAAAAAAGCCCTAACGTTGAGGTT 6385 36 100.0 30 .................................... AAAGTAAATCGTCTTCCTCCCACTCAAACT 6319 36 100.0 30 .................................... AATAAAATAAATGATGTTGTTAGATTGATT 6253 36 100.0 30 .................................... TCATTTTCTCCTGGAACGTTTCTGTTACCA 6187 36 100.0 30 .................................... ACGATACGCAAGAAATTAAGTGATTTATAC 6121 36 100.0 30 .................................... TTAATCCTAACGCTTCGGAAAATCGACACC 6055 36 100.0 30 .................................... TCTGCCATTCATCACTAAATTCACATAAAT 5989 36 100.0 30 .................................... GTGGTGACTGTCTAGTCCGTTCAGCAAAGG 5923 36 100.0 30 .................................... TTACATTATGGCTAACTCCTACGCCTTTGA 5857 36 100.0 30 .................................... TGATAACATTACGCAAGAAAGATAAAAACA 5791 36 100.0 30 .................................... ATCGAAATCACCTACACCAAGAAAAAAAGC 5725 36 100.0 30 .................................... TCCGACAAGGAAGACCCGTTCCCGACTTTG 5659 36 100.0 30 .................................... AATGGACGGTGCTGTTGTTGTCACTGAAAA 5593 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5529 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5494,5497,5502] ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 175290-175771 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVEO01000003.1 Listeria monocytogenes strain MQ140032 MQ140032_contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 175290 29 96.6 35 ................T............ TTGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT 175354 29 96.6 35 ................T............ TCTGTAAAATCAAAAGTATCATAGAAACGATCTTC 175418 29 100.0 35 ............................. TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA 175482 29 100.0 36 ............................. GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 175547 29 100.0 35 ............................. TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 175611 29 93.1 37 T...............A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 175677 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [175700] 175743 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 92.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGAGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //