Array 1 468348-469472 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTK02000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0304 NODE_2_length_702521_cov_37.492211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 468348 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 468409 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 468470 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 468531 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 468592 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 468653 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 468714 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 468775 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 468836 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 468897 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 468958 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 469019 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 469080 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 469141 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 469202 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 469263 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 469324 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 469385 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 469445 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485595-486967 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTK02000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0304 NODE_2_length_702521_cov_37.492211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 485595 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 485656 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 485717 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 485778 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 485839 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 485900 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 485961 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 486022 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 486083 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 486144 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 486205 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 486266 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 486327 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 486388 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 486449 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 486510 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 486571 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 486632 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 486694 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 486755 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 486816 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 486877 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 486938 29 96.6 0 ...............A............. | A [486965] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //