Array 1 94831-94130 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZA01000009.1 Escherichia coli strain MOD1-EC6365 MOD1-EC6365_9_length_103614_cov_26.1281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94830 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 94769 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 94708 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 94647 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 94586 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 94525 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 94464 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 94403 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 94342 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 94280 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94219 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94158 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1570-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZA01000016.1 Escherichia coli strain MOD1-EC6365 MOD1-EC6365_16_length_86140_cov_26.0404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1569 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1508 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1447 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1386 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1325 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1264 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1203 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1142 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1081 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1020 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 959 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 898 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 837 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 776 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 715 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 654 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 593 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 532 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 471 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 410 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 349 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 288 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 227 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTACTTTATCTTAAAAACATCTGACACTTCCGACGACTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //