Array 1 349480-350972 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUM01000002.1 Salmonella enterica isolate STY149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 349480 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 349541 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 349602 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 349663 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 349724 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 349785 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 349846 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349907 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349968 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 350029 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 350090 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 350151 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 350212 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 350273 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 350334 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 350395 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 350457 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 350518 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 350579 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 350640 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 350701 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 350762 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 350823 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 350884 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 350945 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 367104-368030 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUM01000002.1 Salmonella enterica isolate STY149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 367104 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 367165 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 367226 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 367287 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 367349 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 367452 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 367513 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 367574 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 367635 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 367696 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 367757 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 367818 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 367879 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 367940 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 368001 29 96.6 0 A............................ | A [368027] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //