Array 1 9220-10443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLY01000068.1 Neisseria meningitidis strain P3978 00003.P3978_scaffold22.1.2.57247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9220 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 9286 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 9352 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 9418 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 9484 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 9550 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 9616 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 9682 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 9748 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 9814 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 9880 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 9946 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 10012 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 10078 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 10144 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 10210 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 10276 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 10342 36 100.0 30 .................................... TGCGCACGAAATATCCCAATGCCACACCGG 10408 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //