Array 1 914931-916879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044226.1 Mycoplasma gallisepticum strain mx-4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 914931 36 100.0 30 .................................... CAAACCGCAAAAGACAAAATATTTATTAAA 914997 36 100.0 30 .................................... TTGAGATATTAATCTGATCTAAATTTTGAG 915063 36 100.0 30 .................................... TTTTATTCCCGAAAACATCAAAAAAATTGA 915129 36 100.0 30 .................................... GGTAGTTGGTAATTTGTCTGGTTCACTATT 915195 36 100.0 30 .................................... CATCTTTAAATAGCTCAGTTAATTTTGTTT 915261 36 100.0 30 .................................... AACAGGTTTCTGGGTTAGTTTATAAAACAT 915327 36 100.0 31 .................................... CTTCGTCGATCTTTTCTGTTAAATCTTGGGG 915394 36 100.0 29 .................................... AGTGGGTTATTAGGAGCGAACGATTGACA 915459 36 100.0 30 .................................... AACCAGAACAAGGTGGCTATATTGTTTGGT 915525 36 100.0 30 .................................... TTTGGCTATAAAGTAAGTCTTTGTGACGGT 915591 36 100.0 30 .................................... TTGGGGCTTATATTCGTCGTCTTTTTCTGT 915657 36 100.0 30 .................................... AAAACCAGAACAAGGTGGCTATATTGTGTG 915723 36 100.0 31 .................................... CTAATTTGACTAAGTAATACTTGTCGCGCTT 915790 36 100.0 30 .................................... ATCGTCAAGTTCGCAGTTTACGCAGCTGGG 915856 36 100.0 30 .................................... AATACTTTAAAAACATACATTATGCTACAT 915922 36 100.0 30 .................................... TTCGTAAAACTCGAGACGAGTTTTAGAAAC 915988 36 100.0 30 .................................... TGGTCTTAATTGAAGACGAATTACTTTATT 916054 36 100.0 30 .................................... AAAAAAAATATCGGAAAATCTTATCAGATC 916120 36 100.0 30 .................................... AATTGTGTGTAAGTAACTTGCAGCCGTTTC 916186 36 100.0 28 .................................... AGCAAAAAAACTGCAAGCGCTTATTTAG 916250 36 100.0 30 .................................... ACTCACCAGCAACGATGTCTATTTCTGTGC 916316 36 100.0 30 .................................... ATAAGTAAATATAATTATGTTAGTCGCCCC 916382 36 100.0 30 .................................... CCGCACTAAATAGTAGTGCTAATATGATAA 916448 36 100.0 30 .................................... AATTTAGAGATCATTTTATCACGGCATCAA 916514 36 100.0 30 .................................... CTGATTTTAAAAAAGAACGGCTAATTACAT 916580 36 100.0 30 .................................... TTTCCCCCGTGATAATATCTGACGAGTTAG 916646 36 97.2 30 ...........A........................ CATCCAAATCCGCAGGCTTAACATAACCCA 916712 36 100.0 30 .................................... AATTTGAAGGTGTTAAGTACTTGGTTTTTG 916778 36 100.0 30 .................................... AGTTTTTTTTGCAGATATTTTTTATTTGTA 916844 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGAGACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTAATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCAAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //