Array 1 93011-94076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLHB01000016.1 Escherichia coli strain MOD1-EC5711 MOD1-EC5711_16_length_109857_cov_37.641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93011 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 93072 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 93133 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 93194 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 93255 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 93316 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 93377 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 93438 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 93499 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 93560 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 93621 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 93682 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 93743 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 93804 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 93865 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 93926 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 93987 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 94048 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10263-11330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLHB01000041.1 Escherichia coli strain MOD1-EC5711 MOD1-EC5711_41_length_21844_cov_39.4604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10263 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 10324 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 10385 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 10446 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 10507 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 10568 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 10629 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10690 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10751 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 10812 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 10873 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 10935 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 10996 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 11057 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 11119 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 11180 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 11241 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 11302 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //