Array 1 216928-215555 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTN02000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0286 NODE_2_length_702521_cov_27.180696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216927 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 216866 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 216805 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 216744 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 216683 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 216622 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 216561 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 216500 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 216439 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 216378 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 216317 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 216256 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 216195 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 216134 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 216073 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 216012 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 215951 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 215890 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 215828 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 215767 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 215706 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 215645 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 215584 29 96.6 0 ...............A............. | A [215557] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234175-233050 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTN02000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0286 NODE_2_length_702521_cov_27.180696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234174 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 234113 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 234052 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 233991 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 233930 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 233869 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 233808 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 233747 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 233686 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 233625 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 233564 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 233503 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 233442 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 233381 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 233320 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 233259 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 233198 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 233137 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233077 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //