Array 1 22625-20519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAI010000093.1 Salmonella enterica isolate 3220_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22624 29 100.0 32 ............................. AGAACTTTGCGAATCAGGTAAATGCCCGATGG 22563 29 100.0 32 ............................. AGTGCAACGCTCTGAGTGCTGACGTGACCCGC 22502 29 100.0 32 ............................. TCTCATTAATTCAACTCCTTAACATGAGTTAA 22441 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 22380 29 100.0 32 ............................. CACTCGATCATTAGTTACTAAAATATATAATA 22319 29 100.0 32 ............................. TACAATATCAACCTGTTAATGTACAAAACGAT 22258 29 100.0 32 ............................. TGATATATCGTATAAACTTACATCGTTATATT 22197 29 96.6 32 ............................T TCTGCAATTGTTTATTATATTAACGGTGGCGC 22136 29 100.0 32 ............................. ATAACAGTACCGGCTTCGTTACTTTTGCCAGT 22075 29 100.0 32 ............................. CATACGAAAAGAAATGGAATTATTATTTGAAT 22014 29 100.0 32 ............................. CTGCTTTAATGCGTAATATTGAATTTTTAGAT 21953 29 100.0 32 ............................. TAATTGAAAATGATATAGTATTATCATTAAAA 21892 29 100.0 32 ............................. TAACTCCGGCCCCGTATATACGGGGCTTTTTT 21831 29 100.0 32 ............................. TCGACTTAATAAAACCGGATATTAGCGCACAA 21770 29 100.0 32 ............................. CCTACTGTATATCTGTTCCGATGAGCCGGAAA 21709 29 100.0 32 ............................. AAACAGTATATAATGAGATTATGTCTCAATTA 21648 29 100.0 32 ............................. AATTACCAGAATATGATACATCTGGAAATTTA 21587 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 21526 29 100.0 32 ............................. TAAATGTAGGTGATTTAGTAAAACCTTTAGCG 21465 29 100.0 32 ............................. GTACAAGGTGTAGATGTTTTTTTCATATAACC 21404 29 100.0 32 ............................. CCGTCCTCCTGGCGGTTTTTTATAGGGATTAA 21343 29 100.0 32 ............................. TGCCGGGGTTCAGCGGTCTCTATTTTCCTCGC 21282 29 100.0 32 ............................. AGGATTTAATATGATGCCACCGTTCCCATATT 21221 29 100.0 32 ............................. GTTAACATTTAAAAAAATCAATAATAGTTATT 21160 29 100.0 32 ............................. GCGAGGTGCTGGCCGCTGATGTGGATGATTGC 21099 29 96.6 32 .........................C... TTAATTTTTCTTTAGAGTTTTTTAATTTTTTA 21038 29 100.0 32 ............................. AAAACGGCCCCGGCCTGCCTGACTGAAGCGGA 20977 29 100.0 33 ............................. GATTACTCGATCCACACGCTGACGCTGGCGGAC 20915 29 100.0 32 ............................. CTCGGCGTCGAGATAGTCACCGACGTCAGCGC 20854 29 100.0 32 ............................. AGATCCGCCGGGAGTTTGCTGCACAGGCTGCT 20793 29 100.0 32 ............................. AATTTATTCGTCTTAAAAAACCACAGGATAGA 20732 29 100.0 32 ............................. TATAACTATGATTTGTTTTATATTTAACTATA 20671 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 20610 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 20548 29 86.2 0 TAA.........T................ | A [20521] ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGTGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40248-39183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAI010000093.1 Salmonella enterica isolate 3220_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40247 29 100.0 32 ............................. TACGCCGGATATATGGCAGCGGCAAGAAATAT 40186 29 100.0 32 ............................. TTAAACAATTCCCAACTCCTTCAGCTAATCTG 40125 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 40064 29 100.0 32 ............................. CTTTAGCGTTAGGGTTAGATTCTCCAGAAGTT 40003 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 39942 29 100.0 32 ............................. GTCTTGAACTGCATAATCATTTTACCCGTTTC 39881 29 100.0 32 ............................. CTGGTTGTAATGTAATATTAAAAGTTAACAAA 39820 29 100.0 32 ............................. ATGATGATTATGATTTTGATTTAGCTGAATCA 39759 29 100.0 32 ............................. TTCTTTGGGCACGATACCGGATGGCGCGCCAA 39698 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGTAGT 39637 29 100.0 32 ............................. CCCACATTACGCGGGCTTTGTTGGGCATTATA 39576 29 100.0 32 ............................. CGCATTATGCGAACGGTCGTGAAAGAGGCCGC 39515 29 100.0 32 ............................. ATACTGCTTGTCCTGGATTTGCTGATCAATTC 39454 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 39393 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 39332 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 39271 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 39210 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //