Array 1 2331-2826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTUN01000035.1 Bacillus cereus strain AFS015939 AFS015939_105_D4_Contig35_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2331 32 100.0 34 ................................ GAAGCCGTTCGATGAGAAATTCCAATGGACATGG 2397 32 100.0 35 ................................ TATCCGCTAATGTAATTTTATTGATTGTATCGAAA 2464 32 100.0 35 ................................ TATACGGGTTAATGACCGTGAAAAAGAAGCAAATG 2531 32 100.0 35 ................................ ACCATTTAATTGTGGATCATCCGAAATTCCAAGTA 2598 32 100.0 33 ................................ TAGAATACTGGTACAAAATAAAAAATAGACAAG 2663 32 100.0 34 ................................ TCCAAATTTCTATTATATTTATCAATCAGCTCGG 2729 32 96.9 33 .....................A.......... CCGTTAACGAAAATATAAAAAGCATACGTGCCG 2794 32 75.0 0 ....T.T..C.......A......T.A.G.C. | A [2817] ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAAGTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTAGTGCATTCGCACCTGAATTTTCATGATTTATGAGCGAATTTTAATATTTTTTATACAAATTTTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTTATGGTAATTTAGTATCTCTGCTGGAGTAAGAGGAACTGCTTCAATTCATACAGAAACTAGTGTTGATCCAATTGACATTACTGGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCACATACGATGGGGATGAAACATGGTATTGATCTTGGAGCTTATATTTTTTGTGAAAGTATTCATATGCAATGAGTAAGGAATACAGATTTTACCAAAGGGGATGCGAAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAGCATAATTCAAAATTTGGCTAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAAAATTAGATATTTTAAAAGTGGCGATTATTGATGG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6183-5886 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTUN01000047.1 Bacillus cereus strain AFS015939 AFS015939_105_D4_Contig47_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6182 32 100.0 35 ................................ GGAGAGGATGCATTGGCTCCTCACGTTGATTTAAA 6115 32 100.0 35 ................................ TTGGTGATTCTGCTCAAGAAATTGAAGAATGGAAC 6048 32 96.9 34 ...................T............ TCAATAGAAATGTTTTTGCTATCCACAACTTGAG 5982 32 90.6 33 .........T.......C............G. CCGAAATAATATCCTTGCGGGAAATCCTCTCTT 5917 32 96.9 0 .........T...................... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAACATGGAGAGACAGAGAAATTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGCACGAGCTTACTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCACATTATAAAACTATACATTCTTGTTTATCAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATTAGTGTAAAAGGATGAATTGATTTAGATAGCCCTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGAACATTCGCACCTAGAATTCTTATACTTTATGAAGTGAATTTATAATTTTTATACAAATTACTTTATTAAATAAAAATATTTGTATACTCTTGAATAGAATTAAAGTATTTGTGATTGATTTTGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGATGTAGATATTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTGAAAAATATGAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCTGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTA # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //