Array 1 224398-223147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXC01000022.1 Saccharothrix sp. NRRL B-16314 contig22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 224397 29 96.6 32 ............................C TGGCGATCCGCCCTCAGCCTTTTGGGACTGAG 224336 29 93.1 32 .................T..........T GCCTCCCGTCACGCTTCGGGGTGCGGGGGCGT 224275 29 100.0 32 ............................. GACCGGCTGACGGCACCCCGGGCATATCGGGC 224214 29 100.0 32 ............................. CTGACCTGGCGCCGTTCGCACCGCCGGATCAG 224153 29 100.0 32 ............................. AACCGCCTAGAGGAGCTGGGCAAGGGCGACCC 224092 29 100.0 32 ............................. AACCGCCTAGAGGAGCTGGGCAAGGGCGACCC 224031 29 96.6 32 ............................C CGCTGATGGCCTGTGCGCCATCGTGCCTCCCT 223970 29 100.0 32 ............................. CGGCCTGCAACGGCGGTTCGGCGGTGCCGAAG 223909 29 100.0 32 ............................. GTCGGCCAGCACCGTGCGTGCGGCATCGCGCA 223848 29 100.0 32 ............................. TGGTGGCGACCCCGGTGGTGCTGTACCTGATC 223787 29 100.0 32 ............................. CGGGGTGCATTGCGGCCTGTCCGAGACCGCAC 223726 29 100.0 33 ............................. CTGACCCAACGAGGCCGCATCCGTCACCACCTC 223664 29 96.6 32 ............................C GGACTCGGTCCAGTCCTCGGGTGCCCACGGAG 223603 29 96.6 32 ............................C GAGTCCCGCGAGGCGCACTACCCGGCCGGCAT 223542 29 96.6 32 ............................C AGAACGGGCCGCCCGCCACACCCCGGCTGCCA 223481 29 96.6 31 ............................C GAGAGCGCGGGGTTCATGTCGACGGTGCGCT 223421 29 96.6 32 ............................C ATCGCGCGCCGCGAGCAGGGCGGCGAGTAGGA 223360 28 93.1 34 .....................-......T TAGACGGCGATAGACGTCATAGCAACCTTTCAGA 223298 29 96.6 32 ............................C GCCTCGCCGCGCAGCACGCGGTCGAGGTGCTC 223237 29 96.6 32 .............A............... ATGTCGGCCTGCATAGCGGTGCCAGCCGGCGC 223176 29 69.0 0 .........C.A....A......ACAGGC | T [223151] ========== ====== ====== ====== ============================= ================================== ================== 21 29 96.4 32 GTCTTCCCCGCGCGTGCGGGGGTGGTCCG # Left flank : TCGCCCGGAGTGTTCGTCGGCAAAGTCAGCAAGCGGGTCCGCGACCTGATGTGGGCCAGGGTCATCGACATGGTCCGCACCGGCCGCGCCATCATGGTCCACCACGCCGACAACGAACAAGGGCTCGACTTCAAAGTCCACCACCACACCTGGCACCCTGTCGACTACGACGGCATCCAACTCATGCTTCGCCCTGCCGACCCACAACCCGACAACGACTCCGAGCAGAAGTCCGGAGGCAAGGGCTGGAGCACAGCCGGCCGCCGACGCCGCTACGGCAAACGCTGACTCGCGGCCACTAACGTCACGCCGACAACCCGTCGACGGCCAGCAACCGAACGTCACTCACACATGCCTGACTGCGCGCTTGCCCAGACCATCACTGACCCGGTGGACGGGCCTCCGTCTCCTGTGCGGCGTCAGTCCGGTACAACCGTCAAGGCCCGAGCAAACCGATGCTAGAACCGACTCCGGCGCTGTAACGTCCCTGGTCAAGAAGT # Right flank : CTCCGGCACCATCCGGTCGCCTGTGTCGTGTGCCTGGCTGGTCAGAACAGGGCGACTGCTGCGCCGATGACGCCGCAGGACACCAGCGCCGTCACCACGCCTCGGCGCAGCACGAGCAGCCACAGGGCGGCGAGGCCGAGTAGGACGAACTGCCACGGCCTGTCCAGGGACAGGGCCAGCGGCAGGGTGGAGCCGGCGATCGCGCCGATGGCGGCGGCGCCCGCGCCGGTCAGGAACGCTTGGGCCTTGTCGTTGTCCCGCAGCCGTTCCAGCCTCGGCCCGCCCGCGATGACCATCACGAACGACGGCCCGAAGGCCACGAGTGCGGCCAGCAGCCCACCACCCAGCCCGGCCGCGGCGTACCCGACCACCGCGACGGTCTGCACCACCGGTCCCGGCGTGATCTGCCCGAGCGCCACCGCGTTGAGGAACTGCGCGTCGGACATCCACCCGTACGTGTGCACGGCGTCCTCCCGCATCAACGGGATGATGACGAACCC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234994-233687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXC01000022.1 Saccharothrix sp. NRRL B-16314 contig22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234993 29 96.6 32 ............................C GCCCTCGCCGACGCCCGGCACAACCAGGTGAA 234932 29 100.0 32 ............................. GCGGTTGCGCCTGTACGGCTCTTATAGTCCCC 234871 29 96.6 32 ............................T GTGCCGGATCCGATCGGGGTTGATGGCGGTGA 234810 29 100.0 32 ............................. TGCAGGTGTCGGCGCAGGCGCATCCGGGCCAG 234749 29 96.6 33 ............................C CATTCGCCGACCCCGGCCACGCCGACGTACTCG 234687 29 100.0 31 ............................. TGGTCGCGCGGAACCCGGCGTTTTCGACGTG 234627 29 100.0 32 ............................. TGGTCGTGTGGGATGCCCGCCGCGTCGAGCTC 234566 29 96.6 30 ............................C GAACTCCGGCCTCGGCGGGATCGGGGTGGG 234507 29 96.6 32 ............................C GGGACCAGGGGTGCGCAGACTGTGCGCACCCC 234446 29 100.0 32 ............................. CCGCCCGGGTTCGTCGGCAAGCCGGTCCCGCC 234385 29 100.0 32 ............................. GCGTGGTGGCGACCCAGCGCACCGAGTGCAGC 234324 29 100.0 32 ............................. ATTCCGCGCAGGTTCTCGCCGGTGCCGTCACC 234263 29 96.6 32 ............................C ACCGTCATCTCACTGTGGACCATCCTCACCGG 234202 29 96.6 32 ............................C AGCTTGTCGACCTCGTCGCGCGAGCACCACGG 234141 29 96.6 32 ............................C GCGGCGTCGCTGAGGCGCTGGGCGAAGCGGGC 234080 29 100.0 32 ............................. CTCATGCCGGCGGCGCTGAGGGTCCTCACGAC 234019 29 100.0 32 ............................. CGCAGGCGGGCCAGTCGGTGAGGATCGTGGTG 233958 29 100.0 32 ............................. TCGCGGGAGAGGCTTTCCGTCAGCACGGCCAT 233897 29 100.0 32 ............................. TGCTGTTCGACCCGGTCGATCCACCCTCCGGG 233836 29 100.0 32 ............................. CCCTTGTAGTTCGCGATCGCCGCGTTCTGCGC 233775 28 96.6 32 ........-.................... TCGAGATGCCGACCTTCTCGCTCTCGGGCGCC 233715 29 79.3 0 .G.............A.A..A.CA..... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.7 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CCACGAAACACCGACCGACGCCGCCCCGCGCGAAGTCGCCGAGGAAACCGGTATCCACCTTGACGACCTCGAACCGAAGCTGTGGATTCGCGAAACCGCTTCCAGTACCGCGGACACCACCACCACCGCATCGACCACGTCTACCTCGCCACCACCACGACGCCCCGGCTGCCGCTCAAATCCACCGACAACGAGAAACAAGGGCTCATCGAACGCCGCTGGCGGACCCTCGACGACCTCATCCACAGCACCGATAAGCTACTCCCTGCACAGCTGCCCAACCTGCTACGCCAGATCCTCCACGGCAACCTGCCTACCGACCCGCTGATCTTGCACGACTGATCGGCACACGGCACTCGACCGCTCACCCAGTCGGTTTGACGTCGGAACCGGGTTGCAGGAATCGCAGGGACACGGCTACACAGCACCACGACAACAGAACCCAACTCAAACCGATGCTGAAACAGCACAGCCCCGCCTAAAGTAGCTGGTCAAGAAGT # Right flank : AAGTACGGCCGACATGGTCGTGCGCGCACCGCATATTGCGGTCCGGAGATAGCGTGACTGCTCCGTACGGGTGTATTCGGGGTTGAGTAGCTAACGGTCATCAGGGGCCGGAGTATGTCCCCGCTGTGGCCCGCTGCGGGGCCTCCATTCGTGGGAAGGTCGCGTACTCGTGGTGGTCGACTGGCGTGTGGTGTGGGCGAAGTCCGTCCATGATCCACAGGGCAGGTTGACGCACTGGTTGCCCTTGCAGCAGCACTTGGACGACTCGGCGGCCGTCGCCGGCCGACTAGTGGACGAGTGGGTATCGCCGCAGGTCTTGGACCGGGTCGCGAGTGAACTTCCCGATGGTGTCGACGGTGTGCGTGCCCTGGCCTGTTGGCTTGCCGGAGTGCACGACGTGGGAAAGGCGAGCCCTGCCTTCGTCGTGCAGGTGCCCGTCTTGGCCGATCGGATGCGTACGGCCGGCCTCGACGCGCGGCCCGGTCTGTTGTCCCACCCCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83704-84221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXC01000032.1 Saccharothrix sp. NRRL B-16314 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83704 29 100.0 33 ............................. GGCGTCCCGTCCGTGCTGCTCGTCGAGCGGGGT 83766 29 100.0 32 ............................. CTGCTCGCAGTGCGAACCGTGGAGGCCGTACC 83827 29 96.6 32 ............................C AGCCAGGCCGCACCCGCCGTCAGCGGCACGAG 83888 29 100.0 32 ............................. TACTGCACGAGCGACCAGAAGCGCGGCCCGGG 83949 29 100.0 32 ............................. TCAACGACCCGGGCGACGCCGGCAAGGCGTTC 84010 29 100.0 32 ............................. GCGTCGTCGATGTGGTCGGGCGTCATTTTGAG 84071 29 93.1 32 .C..........................C CGGCCGCTCGCCAGGTGCACGTGCGTGGCCAG 84132 29 100.0 32 ............................. TCGACGGTGGCCTGCACACCGTTCTCGTTGAG 84193 29 93.1 0 ..............C.............C | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GTGCGGTGGGGATTGCGCTGGTCACGGTTTTCGTCACGTTGAGCCCGACGCTGCGGGCGTACGGGAAGATTCAGGAGGAGAAGGCATGAGGGACGACATCGCTTACCAGGTGCTCGTGAACGACGAGGGCCAGTACTCCCTGTGGCCCGCACACCACGACGTGCCCGCCGGGTGGAGGTTCGAGGGCACCAAGGGCACCAAGGACGAGTGCTCCGCGCACGTGGACGAGGTGTGGACGGACATGCGCCCAGCGTCCTTGCGCGCCGCCATGGACTGAGCCCAACGCCGTGTGGCCCACGGGCGTCCAGCCCGTGGGCCACACCGCACCCACTGCACCATCCGCACCGCACCAGCACTGTCCACGACTACGACGATCGAGCGCCCGACCGTCCGAAGCAGCGACCTGTACCCTCACGGCCACGCGGTTCGATGGCCGATCACCCACAATCAAACCGATGCAATAACAGCACAGCGCCACCTAAAGCCTTTGGTCAAGAAGT # Right flank : CTGTCAACGGCGCTCGAATGTGGACCCAGCAGCGTCGTTTGAAAACGGACCCACCCCCGCTCCTTCGAACTTCAGCCGGTGGTCCTGGCCGCGGGGACGCGGCCGAGGTCGCGGTCCTTGAGGCGGTAGCTGTCCCCCTTCATCGAGATGACCTCGGCGTGGTGGACCAGCCGGTCGATCATGGCCGCGGCCACGACATCGTCACCGAAGACCTCGCCCCCACCGGCCGAAGGGCTTGTTGCTGGTGACGATCAGGCTCGCCCGTTCGTAGCGGGACGAGACCAGCTGGAAGAACAGGTCGGCGGCCTCGGCCTCGAACGGGATGTAGCCGACCTCGTCCACGACGAGCAGCGGGACACGACCGAGCTTGACCAGTTCCTCCTGGAGCCGACCGGCGTGATGCGTTGTGTCCTGGTCTTCCCCGCGCGAGCGGGGGTGGTCCCACGACTGGGCGGGCCTGCCGCACCGCGGTCGCAGTCTTCCCCCGCAAGCAGGCTGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 133472-131919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXC01000030.1 Saccharothrix sp. NRRL B-16314 contig30.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 133471 29 100.0 32 ............................. TCCTCCTGGCCCGTGAGCTTGCCGTCGGAGGC 133410 29 96.6 32 ............................C GAGAAGGTCAAGGAGATCGCGGCGTCGGCCGG 133349 29 96.6 32 ............................C GAATCCCGCCTGGGCTACCTGCCCGCCAGCTC 133288 29 96.6 33 ............................C TACGGGCAGGCCCGCAGGCGGTTCGCCGACGGC 133226 29 100.0 34 ............................. GTCCACGAGGTCTCCCCGGTGATGCTCGGTGCGT 133163 29 96.6 32 ............................C AGGTCGACGCAGACCAGGCCGACTGCACACGG 133102 29 86.2 31 .....................TG.TC... GCTGCGGAGACGTCCGAAGGGTAGGCCGCCG 133042 29 96.6 32 ............................C CCGAGGTAGTCCACGACCTCGCGCGGCAGCCG 132981 29 96.6 30 ............................C TTCCGCCGGGGCGAGTCCTTCGGCCTACAA 132922 29 96.6 32 ............................C GTCGACCTGTTCGGGTGCGCCGGATCGACCGC 132861 29 96.6 32 ............................C GCCCGATCGGCGATTTCCTCCAGCTCTACCTC 132800 29 100.0 32 ............................. GGGATGGCGCGGTTGAGGGCGCAGATCGCGAC 132739 29 96.6 32 ............................C GGCCGACGCCGGCCACCGGTGGCGAACAGCCA 132678 29 100.0 32 ............................. ATTGGTGCGCGCTTTCGCGATTACCGCGTGAT 132617 29 100.0 32 ............................. GTAGGCGACTTCCGCGTAGCCGCGGCGGTGCA 132556 29 100.0 32 ............................. GCCGAGTCGCTGATCGAGGCCGCACACGACAG 132495 29 100.0 32 ............................. GCGTCGGTCTGGGCACCGCACACCACGCAGGT 132434 29 100.0 32 ............................. TACGTCGGCCCGGTCGCCAAGTCGATCGGTGT 132373 29 100.0 32 ............................. GCGGCGAAGCCATCATCGGTGCGCTCGTCGCC G [132356] 132311 29 96.6 32 ............................C TGGATCATCGATCGGCTCAACTGGTTGATCGA 132250 29 96.6 32 ............................C GCGTACGGAGTGCCCGCCCCGCTGCTCAACGA 132189 29 100.0 33 ............................. CCCACCGACGTCGGCAAGTACGTCAAGCCGCTC 132127 29 100.0 32 ............................. GTGAGCCGCTGCACGGTGTTGCCGTCCTCGTC 132066 29 100.0 32 ............................. TTCTCCGGCCGCGCCCACACGATCTCACTGTC 132005 28 93.1 32 .....................-..C.... TCACGACGTTGGACGACGTGTTCGAGGTGGAC 131945 27 82.8 0 ........A...A-......T-....... | ========== ====== ====== ====== ============================= ================================== ================== 26 29 97.1 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GGTCAATAGATCCTGGTACTCGTACCCGCGATGGGCTGCCTGGAGGTTGGGCATCGGATCAGGTTAAGCGATCGTTCAACATGTCGTGACCGCGGTAGCAGACTGACACGAAGCAACTGACCCATCCGCTCATTCCGCTGACGGTTAGCCCTGTCGGGTGGAATTCCGCTGCCCTGTTCGGGTGACGTCAGGTCATCCTTGGCAGAATCGGCCGATGGCCGGTTCCGCAAACTTGACGACCTTGCGCGAAGCTCTCGACTTCCTGCCGCGACACTTGAGAGAGTCGGCCACGCATGCCAAGTTGGCCGCCGACTGCGAAGCCCTCGGTATGCCGACGCCCCCGCCGGAGCAGGAGGGGACGAACTTCCGGCGGGTGACGGCCAGCTTCGCGGGCCTGCCGGATTCGGCTCGGGTGGAGGTCGCACAGAAGGTGCTGGCCACCGGCTCGCTGCCTGCCGAGCAGCGCACCAGCGTCGAGGACGCGCTGTGGGGGTTGAGTG # Right flank : CTGCCCGATGTCACCAGCCGGATCAGTGACACGTCTTCTCGGGATGAGTGCGGGCAGCCGAGCAAGAACCCGATCGGACAGCGATGACGTGGTATCACCAGCAGCCGCTCGAAATGACCAACCGGGGTCCGTAGCTGGACGGGTTGTCCGGCCGTCACCCGATGGCCGGACAACCACAACTCCCTACAGCCCTTCCGATACTCCGAGCACCGCCCGCAACGGGTGTTCCTCCACCTCCTCGTGCACTGTGACCGCCAATGGGTGTCGGATGCCGGTCATGGCCTGCAACGCCGTCGCCACCTCCGGAAGGCTCGCCTTGACATAGGTGTAGGTCGCGCCGTGCGTGTTGGAGACGGGCCCGACGTGTCCGGCGTAGGCGCGCGCCACCGCGAATCCGAAGTTGCGTTCCACCCACGTCAGTGTGGTGTGCCGCAACCAGTGAGTGCTGATCATCCGGGTGTGGACCGTGTCCACGTGCCTGCCGATGCGTCCCCACAGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33023-31243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXC01000049.1 Saccharothrix sp. NRRL B-16314 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================== ================== 33022 29 62.1 86 .A.........C..T..A..T..TCCTTT TCCACTGTCGCAGGATCCGTAGTCATCACCCGCCGGATGCGTGTGCTCGACGGACCGGGTCGGGACGTCGCGGACGACGGTGCGCA 32904 29 65.5 131 TC.CA..G...A..G..T......TG... ACCGCTTGTCCGCAGTGCCGCGGGTCGGCGCGGCGAACCCTCCGGCACTCGCCTCGGGCTGACCCGCAACGCAGGTACACAGCGCTGTCGGCCACCACACGTCCCTGTCCACATTCGTCATCCTCCACAAA CCGC [32882] 32740 29 86.2 32 .GAA........................C TCGCGGGTGTCCTCACCCAGCGCGTAGCCGGC 32679 29 100.0 32 ............................. GAGCGGTGGGCGGTGCGCTACCACGTGTCCCA 32618 29 100.0 30 ............................. GCACGGGCGACCACCCGGTCCTTGCGGGCG G [32601] 32556 29 100.0 32 ............................. GCCGAGGACATCACCGCCGCGATCCTCGCCGG G [32539] 32494 29 100.0 30 ............................. TCGGGGGCGAGGCACCCGAACACACCTGCC CC [32467] 32433 29 100.0 31 ............................. GCAGGCGCAGCTTGTCGGGTCGGAGCACCAC C [32407] 32372 29 96.6 32 ......................C...... CCGGCAACCACCTGACCCACCTCGGTATCCGC 32311 29 96.6 32 ............................C TGGCACACGTCGAGGTCGCGCCACTGGATGTG 32250 29 96.6 32 ............................T GTGACAGTTCGAGTGGTGCCTGATGACGCGGT 32189 29 100.0 32 ............................. GCGACCGCCCCGACCGCGCTCACCGCCCGCGC 32128 29 100.0 32 ............................. GCGACCGCCCCGACCGCGCTCACCGCCCGCGC 32067 29 96.6 32 ............................C CCGCACTTCCCAGCGCGTCTCGTCGCGCACCG 32006 28 93.1 32 .................-..........C CCTTCCAGGGTGGCCAGTGCGCGACACAGCGC 31946 29 100.0 32 ............................. GTGCTGGTGTTCGTGCCCGGCTCGATCATCAC 31885 29 100.0 32 ............................. TCCTTGTCCTCCATCGGCACCTGTACGTCAGG 31824 29 86.2 31 .....................TG.TC... GTGTCCTGCACTGCCCCTTCGACGGCTGGCG 31764 29 96.6 32 ............................C TCGATGAGCATCGAGTGGGCGATGCTGTCCGA 31703 29 96.6 34 ............................C GCCCGCATGGTCGAGTCCAACCCCCACCTGGTGA 31640 29 96.6 33 ............................T TCTCCCCCCCGCCTCCGCGTGGTGGCGGACTTC 31578 29 96.6 32 ............................C GGGCCTCGCCGATGTTCTCCAGCGTGCGCACC 31517 29 100.0 32 ............................. TCAAGGACGCCGCGCAGCAGTACGCCGATCTT 31456 29 96.6 32 ............................C ACGCCTGGCTACTCGGCCTGGTCGACGCCTTC 31395 29 100.0 31 ............................. GTGTCCAGACCGGCTGGGCGTCCTCGTTCCA C [31369] 31334 29 100.0 32 ............................. GCGTTGCCCTCGTCGGTGCGGTGGCCGACCGG GG [31316] 31271 29 82.8 0 .................C...TG.AC... | ========== ====== ====== ====== ============================= =================================================================================================================================== ================== 27 29 94.3 38 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GGTCTCAAGATCCGGCTGATCCAGTGCACCAAGGCACTGACGTCTTCGCCCACTGCCCGAACATCGCTGCTCAGGGCTTCCATGAGTCCAGCAAGGCTGGAAGCACGCAGAGCAGATCGGCCTGCAGGCAGAGAACATCGTTCCCTGTGCCGCTCGAAAAGTAATCGTCGCTGGTAGAGCCAGGCTGTCACGGCGTTGCGACCATGTCCGGGTGTCCGGTCGTGGGTCGGTCGCCTCGTTCACCGCGCGGTCGGCCAGGCCTCGCCGGATCCAGGTCCTCAACGCCTCGTGATGCACGCCGAGTTGGCGGGCTAGGGGCGCGATCGCCAGCTTCGGATCCGGCTCCCGGTACAGCCGGACCGCACGGGATCTCAGCTCGTCGGGGTTCTTCTTCGATGGCGCGCCACGGACGACTCCCTTCGGGCCGTGCCTGGAAAATCCTCGCGCTACTGGTGAACCTCATTCCGTTGAAACCTCACTGCCTCGGAGTGCCTGGCACG # Right flank : TGGTCCCCGCGGTCGAGGCAATCAAGATCAAGTCTTTTGGATCCGCTGGGACATCGCCCCGACGACACGGCCTCATGGCCTGTCACTCCCCAGGGGGATCGGCGCGTCCGGCACGCCCATCGTCCCCGGCCGCGGACACCTGGGCATACGGCCTGATCAGCGAGAGCCGAGAACGCCGCCCCGATGCCGGATCACGGTGTGACGGCGGCGCGCAGCCAGTCCGGCACGTGCTCGTCGACGGGCGGGAAAAGCTCCAGTTCTCGGGCGTGGGCCGATGGGGGCGGCGGGGTGCGGAAACGCGGCTCGTCCTGGCGGTTGTACTCGATCGCGTAGTTGCCCGGACAGTCGAGCCAGTAGGTGGCGTGCAGCCACGTGCCGCGCCCCGGGCGGCCATTCCGGCGCGCAGCCGGGTGAACAGGTCGCGCGCTTCCTCGTGCGCTGCTTCAGCGCCGTGCCGTTGCCACTGCAGTGATCGTTGAGGCCTATGATCTGCAGTCTGC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //