Array 1 1490911-1490215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033164.1 Streptococcus dysgalactiae subsp. dysgalactiae strain DB31752-13 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1490910 36 100.0 30 .................................... AGGATATTATATTAATCCAGAATATGTTGT 1490844 36 100.0 30 .................................... ACGTCAAGGTCCTTATAACGACGTTTACAT 1490778 36 100.0 30 .................................... TTTTTGTTGTAAATAAATCAGCAGCTTTTG 1490712 36 100.0 30 .................................... TAAAACAGGTTTAACTGCCTCTGGTTTAAC 1490646 36 100.0 30 .................................... TAATTCTATCGCCAATAATTTCCACGCCGT 1490580 36 100.0 30 .................................... CAAATTTTTTAACGACATTGATAAAAATGT 1490514 36 100.0 30 .................................... GACTGTTTAGGAAGCGTCCAACCTCTTCTT 1490448 36 100.0 30 .................................... TGAGCATCAAGTCAGACAGAGTGCTCTGTT 1490382 36 100.0 30 .................................... CCTTTAATTTAAAATGGCTTTGCCAGCAAA 1490316 36 100.0 30 .................................... GACAAAGCGAATTGCTGAGTTGACGGGAAA 1490250 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1870502-1868342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033164.1 Streptococcus dysgalactiae subsp. dysgalactiae strain DB31752-13 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1870501 32 100.0 37 ................................ AGCCATTAGTTACCCCCATTTTAAACAACTTCAGCAG 1870432 32 100.0 36 ................................ CGTCTCATTGTTAATCATTTTCATGACTTTGATTTT 1870364 32 100.0 34 ................................ GACTTTGGCCAAATGCAAGTAAGCTCTATCGCCA 1870298 32 100.0 33 ................................ TCGTGTCAACCCAAAACTGAGCGACTAACTTTT 1870233 32 100.0 35 ................................ TATATTGAATTAAAATTAAAGTTTTTTGAAAACGA 1870166 32 100.0 34 ................................ AATCTCATTTTAGAACGAATTCTACGCTGTTGCC 1870100 32 100.0 36 ................................ CGTCTCATTGTTAATCATTTTCATGACTTTGATTTT 1870032 32 100.0 34 ................................ GACTTTGGCCAAATGCAAGTAAGCTCTATCGCCA 1869966 32 100.0 33 ................................ TCGTGTCAACCCAAAACTGAGCGACTAACTTTT 1869901 32 100.0 35 ................................ TATATTGAATTAAAATTAAAGTTTTTTGAAAACGA 1869834 32 100.0 34 ................................ AATCTCATTTTAGAACGAATTCTACGCTGTTGCC 1869768 32 100.0 34 ................................ AATAAAGACTATTGTAACAGGTGCTTTGTTAGAT 1869702 32 100.0 34 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGAT 1869636 32 100.0 34 ................................ AGTTTCGAAATTAAGCAATTGGGAAAATGCAAAA 1869570 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 1869503 32 100.0 34 ................................ AGTTTCGAAATTAAGCAATTGGGAAAATGCAAAA 1869437 32 100.0 36 ................................ AATAATATCAACAGTCTCCAGTCTCCCATCAAGATT 1869369 32 100.0 34 ................................ TTTATCTGTGCCGCGGTTATCATAGAATAAAAGC 1869303 32 100.0 35 ................................ GCTAAATTTAAAATCCTTGAACTTGCTCATACAAT 1869236 32 100.0 36 ................................ ATTTAATAGCTTTCCTGTAAATATTTAAAACTTAAT 1869168 32 100.0 33 ................................ TATTGGTATATACAGCAACAACAAGGAAGGTTA 1869103 32 100.0 33 ................................ TACCTCAGTATAGGTGTCAGCTTAGACGAATTT 1869038 32 100.0 33 ................................ AAAAGTGCAACGAACCAATAAAGAAGTAGCTGA 1868973 32 100.0 34 ................................ CTATTGCATTTAATGCAAACTCCATATTTTTATC 1868907 32 100.0 34 ................................ TTTTTGCATCAGTAAATCAAAATGCAGGAGAGTG 1868841 32 100.0 34 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATAC 1868775 32 100.0 34 ................................ TTTTCTTACGATAACCTTAAAATTATCATTTTCG 1868709 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1868643 32 96.9 35 ....................A........... ACAAGATATTGATGATAATAGACCAAAGGTTCAAA 1868576 32 100.0 37 ................................ CTAAGTCCCTCTAGCAAATTGCGGACTTTTTCGGAAC 1868507 32 100.0 35 ................................ ACTGTATCGTATAACACATTCAAGAAAATTCGCAA 1868440 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 1868373 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.6 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //