Array 1 19480-19630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19480 29 100.0 32 ............................. GTCACGACCTGCACGGTCTCGAAGGACGCGGC 19541 29 100.0 32 ............................. TGATCCTAGGCCGCTGCCAGAACCACCCTCAC 19602 29 65.5 0 ...................NNNNNNNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCCTCGACGTCCAGCGGGTAGCCGTCCACCTCATCGAGAAACAGGTATCGCACCGGCATCGAGCGCAAACCCACCGCGCTGTTGGCGCCGGTCATGACCAGCACGCCGCCTCGAAACTCTTTGGCGAGGATGGTGTTGCCCGAGTCCCGCGAGCGGGCTGGCGCGATGCGCTCGGCCAGCGCGGACGACTCCTCGATCAACGGATCGATCCGTTGCTTCGAGTTCCGCTTGGCCATCTCCACGGTGGGCCAGACCGCCATCATGGGACCGGGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCAGTACGGCGCCTGGGGTGCTCGTCGCAACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCATAGCCTTCGGTGGTGTGCGGGCGAGTGAAGCCCTCGGGGTAGCTGCCCGGGTAGTAGTACTGCAGCACGCCTACGTCGATCGGCACGTCCTTGACGATCTCGGTCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCACGACCGCGCCAGGCGCTCGCTCGTGGCGCGGTCGATTGCCGCCGCCGTCGCGCTCATCAGCTGGCTCGGCCCGGTGCAGGTCTCCTGGCAGGCCGCCCGGCAGAGTGCCGCCACCATTGCGCTGCACGGCGCCACCGCCTCGGATGGTTACGACAGCCCGTTCACGCCGTGGATCACCACCGGCCGCC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1731861-1731344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1731860 29 100.0 32 ............................. GATTTCCAGTCCCGAGCAGCGCGAGCCCGGTC 1731799 29 100.0 32 ............................. CCGTCGCATTCGAGGAGGCACGCCGCAAAGGC 1731738 29 100.0 32 ............................. CTGAGCGGCATTTTCTGCCAAAAACCAGAATT 1731677 29 100.0 32 ............................. ACCGCACGCGTGCAGGCGCAATTTGACTACGC 1731616 29 100.0 32 ............................. ATCAGGCGATGATTTTGTTTCGTGATGCTGTC 1731555 29 100.0 32 ............................. GCGTGGGCCCGCGTTGATATCAGCAACGATGA 1731494 29 100.0 32 ............................. TCATGCCCCTGGGGCTGTTCCTGATCCTGGTT 1731433 29 100.0 32 ............................. TCAGCTAGTTTCTGGTAGCCACTGCCTATGGC 1731372 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : TCGATCAAGCAGCACGCCTGGTTGGGCTAGCAGTGTTCCCCGCGCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCGGGATGCGGCGGGGCAGTCGCTATCCGGCTCGCGGCCGGTGCCGCCGCGCTGCACGTTCGGTTCGCCGCGCGAGGCGCTGGACGCGGCGCTGTTGTATGGGCAGCGCCTGCTGCGGGATTGGGTGCGCGGCGCCGCGGCAGCGGACGGCCATGCGCAGGGGTAGCGCGATCGCCTCGGCTACCGGTCTTCCAATGCGCGCCGCGCTTCGCGCGACAGGCCGAGGGTCCAGTAGCCCTTGGCCAGGATGGCATCGCGGGGAATGTTCCAGGCGCCTTCGAGCAGGGCCCGCACCTGCTTGAGCAGGGAGGATTCTCCGGCCAGGAGAACCTGCGGCGTGCCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1742339-1740787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1742338 29 100.0 32 ............................. CGCCATCGACCGGCAGCGTCTTGATGCTCGGC 1742277 29 100.0 32 ............................. AGCAGGACATGCAGCAGAAGATGGCTCAGATG 1742216 29 100.0 32 ............................. CTGCCGGGCACGCTGTACATGGCGCGCTACCC 1742155 29 100.0 32 ............................. ATGACCACGTGGTTGAACGGCTAACGTCAAAC 1742094 29 100.0 32 ............................. TCGACCATCGCAAAGAAGGGTTTCGACAAACC 1742033 29 100.0 32 ............................. ACATGAATGGCATTTTGAACATGCTGTCTGCT 1741972 29 100.0 32 ............................. TCCTCGTTGGTGCCGCTCTCTTCCTCGTGGTC 1741911 29 100.0 32 ............................. CCAATCACCAACCGGCGCGGGGTTGGTGCGCC 1741850 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 1741789 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 1741728 29 100.0 32 ............................. GTCGGCAAGCTGCCGTTCGGCGAGGACATGTT 1741667 29 100.0 32 ............................. AGATCAAACTGTGCCATGCCCTGGGAGGTTTG 1741606 29 100.0 32 ............................. ATGAGTACCTTGCTGCGTCCAGCACTCGCAAC 1741545 29 100.0 32 ............................. TGTTGACATTAGGGGAGTGGCCGGGAGCTGAT 1741484 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 1741423 29 100.0 32 ............................. CCGCCTAATCCAGGCGATGCGATCCATACCCC 1741362 29 100.0 32 ............................. TACTTGATCGATACTGACCAGCTCTAGCCTCG 1741301 29 100.0 32 ............................. CCTTTTCCGATACGGGCAGCTAGTGAAAAATG 1741240 29 100.0 32 ............................. CAGCAGCTAGTGCAGGTGCCGGGGACGTTCAT 1741179 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 1741118 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 1741057 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 1740996 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 1740935 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 1740874 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 1740815 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================ ================== 26 29 97.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : GGCTGGTGATCTGGCCGTCCTCGATGTGGACGTTCATGCGGATGCGCACGGTGCCGCCGTCCATCACCACCATCGGCAGCACGCGCAGCGACACGCCCGCCGAAATCGCGTACAGATCGGCCGACTGGTAGCCGGCGACGGGCACGTAGAAGTTCTGCCGGTTGTCCATCACGGCCTCGGTGTTGTCGAGCGTGGCCACTTTCGGGCTGGCGGTGATGCGCGCTTGGTTGGTCTGCTGCAGGGCGCTGATGCGCGCCATCAGGTAGCGCGAGCCGCCGCCGATCACCGCGCTCAGCACCCCGCCCGCCGGCGTGGCGGCGATGGCGGCCGCGGCACCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGCGGGGATGAACCGCGGGCCGGCCACGACAAGGCTATGTTGGATGC # Right flank : TCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1781191-1779758 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1781190 29 100.0 32 ............................. ACGCTGCGGCCGGGCATGGTTCATCGAATGAC 1781129 29 100.0 32 ............................. GCGCGGTTGATGGTCGAGTGGTACGACGAATC 1781068 29 100.0 32 ............................. TTCCTGCAGCGTGCTGGCAGCGGCGAATGTGT 1781007 29 100.0 32 ............................. CCGTTGGGCGTCGTCATTGTGTCGGGGTACAT 1780946 29 100.0 32 ............................. AATTTTTCTTTCCGCTGAGGATTTCCTGATAC 1780885 29 100.0 32 ............................. TCGTCGCCCGTTGTCCATCCCATCACCGGCCC 1780824 29 100.0 32 ............................. CGGCCTCGTGAAAACCTCGCTGTATCGCTTCC 1780763 29 100.0 32 ............................. ACTGTTCGTCCGAGCCCGCCCGGAACTGCCCA 1780702 29 100.0 32 ............................. TGATCGGTCGGCGGGGGTTCCCCGTGGGTTGA 1780641 29 100.0 32 ............................. CAACGCATCGAGCCCTGTGAAGGTCACGAAGC 1780580 29 100.0 32 ............................. CGAGAGGAACCAATAGCGACTACTGGGTGGCC 1780519 29 100.0 32 ............................. GAGGAGAGATGGGTAAGGAGCTGCAGAAACTG 1780458 29 100.0 32 ............................. CGCGACACCCCGGCGATACAGGGGTGACTCTG 1780397 29 96.6 33 ............................T TGCGGGCTGGCCGACAACATGTACGGTTGCAGA 1780335 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 1780274 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 1780213 29 100.0 32 ............................. GACTTGAACACCGAGGCCTGGGCCCAGGTCAA 1780152 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 1780091 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 1780030 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 1779969 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 1779908 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 1779847 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1779786 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.8 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CGCCCAGGACGTGTCCAACTGCCTCAATGGCCTGAGCAAGTGGCCAGCAGAGGCGCGCTGCCGGAAAGCGGCCACCGCATTGGCCGAGGCCCTGCCGCTGCACCGGGACGCGCACGGCGATCTGCCGCACTTCCTGCCCATACACCTGTCGAACTGCCTCAACGGCTTGAGCAAGTGGCCCGAGGAGGAAAGCTGCCGGCGGGCGGCGATTACCCTGGCCGGCGCGCTGCTGCAACGCCAGGACGATCTGAGCGATCCGGAGCAGTTCAGCGCCCAGCACTTGTCCAACGCGCTCCACGGCCTGAGCAAGTGGCCGGAAGAGGACACCTGCCGCAAAGCGGCGCTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGCTGGACGGGTTCATCCAATTTTTCCGGCAGCA # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3319252-3318857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3319251 29 100.0 32 ............................. CTGTCGTTGAGGGTGGTGGACCTGACGCCGGT 3319190 29 100.0 32 ............................. TCGAATGATTCGTCGGTCACGTTGGGTGAGCA 3319129 29 100.0 32 ............................. CTTCTTGACGTGGTTGTCTACGAGGGACGGGT 3319068 29 100.0 32 ............................. ATACGACGTGCCTCTGAGTTTGCGGATGCCCT 3319007 29 96.6 32 ............................A ACTCGCCACCCAATGGCGGCTGCAACACTATA 3318946 29 100.0 32 ............................. CGTAAATCCCATGTCTCTTTGAGGCGATGTTG 3318885 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCACGGGCACCGGCGAGGCGAGGATGGCCTGGATGATCTGCCGCATCGAGGCGTCCAGCCCGCCCGGCGTGTCCATCTGCAGCACCACGAGCTGCATGCCTTCCTTGCGGGCCACGTCCAGCCCGTGCACCACGTAGGCCGCGCTGGCCGGCCCGATGGCTCCGGTCAGCGGCAGCACCATCACCGGGGCGGTGGCCGCAAGGGCAAGGCCGCTCCAGACGGCGGCCACGCTTGCCGCCAGCCAGCCGATCCACTGCCGTATCCGCAACGACGGTCGCATGCGCGCCTCCGTTCGTTACTGCCGCGCTTGCTTGCGCTTCTTGTTAGACCTGCGGCGGGGCCTTCGCATTCAGTTTAGGCGGCGACAGCCTCGCCGGTGGGCGAGGGCGCCACCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5351104-5349549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5351103 29 100.0 32 ............................. GATTGACCCAGCCAGGCTCTGAAAACTAAGTT 5351042 29 100.0 32 ............................. CGTGTCGCCGATATTGCGGGAAGCCATGTTGC 5350981 29 100.0 32 ............................. CGACTGGCCAACGAAACCGCCGCTTGCATCAC 5350920 29 100.0 32 ............................. GGTTATCGGACCAGTTGATCTTCACGACTATG 5350859 29 100.0 32 ............................. AATAGGCCGCCATCACTGACCGAGGCCGTCGA 5350798 29 100.0 32 ............................. ATCGATAACGACACGCGCAATGTCTTTTTCTA 5350737 29 100.0 32 ............................. AAAATAAACCCGAATAGATCCGAACAGGAAAA 5350676 29 100.0 32 ............................. CCAACTCAACAGCGGGAGGCCGCATGACTCAC 5350615 29 100.0 32 ............................. CCATAAGGCAATGTGTCGTGTTCGCAGAGGTC 5350554 29 100.0 32 ............................. GCTGCGTGTCCGGAGCATCTTTCGGATAGCGG 5350493 29 100.0 32 ............................. CTGCTGCCAATCATAGTCCAACCGCGCGCCCT 5350432 29 100.0 32 ............................. TCTGCGGGGCGGATGCATGGCGCGGCTGTGCT 5350371 29 100.0 32 ............................. ATAAATTCTCCCGATACGTGGCGGCGATTCGG 5350310 29 100.0 32 ............................. TCGTTCGAGGGCGTCGACATCGTTTGGTGCGA 5350249 29 100.0 32 ............................. CCGGTGCATACGTTTTGGGACTTGGGCCGCGC 5350188 29 100.0 32 ............................. ACGCTGCCGGTCGATGGCGCGGCGGATGTGGA 5350127 29 100.0 32 ............................. TGCTGCCGCAATTCTCATCGCCTGGCTCTGTC 5350066 29 100.0 32 ............................. ACGTTCCGCAGCAGAATGCGGCAACGATGATG 5350005 29 100.0 32 ............................. CGTTTGTGTATTACTCATGTCATGACATCCAG 5349944 29 100.0 32 ............................. TTTTGAGGCGGTTTCAATTGATAAATCCATTA 5349883 29 100.0 32 ............................. CAATCTTTGCGTGATGGTCGGTTCGGACAACA 5349822 29 100.0 32 ............................. CAACCGACGCAAATGGGATCGCACGCGATATG 5349761 29 100.0 32 ............................. GGCAGCTCGCTCAGTCTGTATCCGCCATTATC 5349700 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 5349639 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 5349577 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TGCGCTGCAGCTCGACCTGCCGACGGGGCCGTCGCGCGATGCGGCCATCCAGGGCGATCCGCAGCGCTTGCGCCAACTGATGCAGAATCTGCTGGAGAATACGCTGCGCTACACCGATGCCGGCGGCACGCTGCGCATCCGCGTCCATCGGGACGGCGCGTGGTGGTGCCTGGACGTGCAGGACAGCGCGCCGGGCGTGCCCGAAGCGATGCTGCCGCGCGTGTTCGATCGGCTGTTCCGCGCCGACCCCTCCCGCAGCCGCGCGCAGGGCGGGGCCGGGCTGGGGCTGAGCCTGTGCCAGACCATCGTGCAGGCGCACGGTGGCACTATCGAAGCCAGACCTTCACCGCTGGGCGGGCTGTGGCTCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGCCATTACGGTCCTGAAC # Right flank : CTGGACGGGGTCATCCAATTTTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTACCTTCTCGAACTCCAACGCCTTGTCCTGCATGGCGAGCTCGTGGCCGCGCTCGCCCTTGCGATCAAGCCACTTCAGGATTTCAGGGGCCAGGCGGAAGGTGCCGCCCAACAAACCGCCCAGGAGGGTCTCGATCATCGCGCCCCCTTTAACAGTTCGAACTTGATGACCGCCCCTGCCACCAACGCCAGCACCAGGCCGGTGGTGATCATCCGGACCATGGTTTGCCAGGCGGTGCGCTTGGCCTCGTTGAAGGCATCCAGCAGGCCGCGCAGCTCGCGGATGTCGTTGCCTGCGTTCTCGCCATCCAGGCCCACTTCGGCCAGCGCCGCGCGTGCGCCGCTCTCGGCGACCCGCTCCAGCAATTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 5484976-5484580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLY01000001.1 Ralstonia solanacearum strain IBSBF1503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5484975 29 100.0 32 ............................. TTTCTGATAAAACCACGGTTCTATGCATCCCC 5484914 29 100.0 32 ............................. TAGGAGCGGCGTAATAACTGCATCTCGCGCCC 5484853 29 100.0 32 ............................. GGTTGCTGTTGTGTGGCTGTATTGCCCATATC 5484792 29 100.0 33 ............................. TCTGCGGCCTTGAACAGCAGATCACCGGCTACC 5484730 29 100.0 32 ............................. CCTCCCCTCGTCATCGGCAAGAGTCCACATCT 5484669 29 100.0 32 ............................. GTCCTACCGTTCCCTCCCTGCTCCCCAATGGT 5484608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCAATACACGCGTGACGACGGCCGAGGGCAGCATCACCAACCTGCAGAACACCGTCAACAACATCAGTAAGGGTTCGACCGGCTTGGTGCAGCAATCGGCGGCAGGCAAGGACATCACGGTGGCCAAGGACCTGGACGGCGATGTGGTGGACTTCAGCGGCACGAACCTGAGCACCAGTGAGACGTTCACGCGCAAGCTGACGGGGCTGGTGGACGGCACGCTGTCGGCGAGCAGTACCGACGCGGTGACGGGCAAGCAGCTCTATACGACCAATCAGAACCTGACTGATACAAACAAGAATCTGGCTGAGACAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : ATCGGCGTGTTCACGCCGGAGCACAAGCAGCTGTGTTCCCCGCGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCTGCTCCCCGCGATTGGTACGTTGACGATGTAGAGTCCGTTCCGAAGAGGAGCGGTCATGAAGAAGCGATTCACCGAAGAACAGATTATTGGCGTGCTGAAGGAAGGCGAGGCAGGCCTGAAGCCGGCAGAGCTGTGCCGCAAGCACGGCATCTCGGAGGCGACCTACTACAACTGGAAGGCGAAGTTCGGCGGGATGACGGTCTCCGAAGCGCAGCGCCTGAAGGAGCTGGAGCAGGAGAACAGCAAGCTCAAGCGCCTGCTGGCCGAGTCGATGCTCGACAACGCCGCGCTGAAGGACCTGCTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCGAAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //