Array 1 478635-479821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPQ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-717 NODE_2_length_714368_cov_45.314_ID_2742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478635 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 478696 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 478757 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 478818 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 478879 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 478940 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 479001 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 479062 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 479123 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 479184 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 479245 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 479306 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 479367 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 479428 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 479489 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 479550 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 479611 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 479672 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 479733 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 479794 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495992-497671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPQ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-717 NODE_2_length_714368_cov_45.314_ID_2742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495992 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 496053 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 496114 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 496175 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 496236 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 496297 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 496358 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 496419 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 496480 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 496541 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 496602 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 496663 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 496725 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 496787 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 496848 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 496909 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 496970 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 497031 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 497092 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 497153 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 497214 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 497276 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 497337 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 497398 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 497459 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 497520 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 497581 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 497642 29 93.1 0 A..............A............. | A [497668] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //