Array 1 37857-38563 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAV01000321.1 Escherichia coli strain EELTKB251 NODE_3332_length_38642_cov_23.573185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 37857 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 37918 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 37979 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 38040 29 100.0 39 ............................. NNNNNNNNNNGGGACGAATCACAGCAGCGTTATCGTGAT 38108 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 38169 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 38230 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 38291 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 38352 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 38413 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 38474 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 38535 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 99.7 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8755-9789 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAV01000337.1 Escherichia coli strain EELTKB251 NODE_4518_length_102958_cov_23.565357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8755 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 8816 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 8877 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 8938 29 100.0 40 ............................. NNNNNNNNNNCTCCAATCAGCAGTGCCCATCTGATATGCA 9007 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9068 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 9129 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 9190 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 9251 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 9312 29 96.6 39 ............................N NNNNNNNNNATATCGGGTGCCAGCCTGGACGCTGGCCGA 9380 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 9441 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9502 29 96.6 39 ............................N NNNNNNNNNGTCTCGAGCGCGGGACGATTCAAAACCAGC 9570 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 9631 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 9692 29 96.6 40 ............................N NNNNNNNNNGGTTGACGTTGATTTTGTTCGTTATGTTGCC 9761 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 17 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNCACGGATAACAGCTACCTGCAAAATTTAAT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-601 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAV01000341.1 Escherichia coli strain EELTKB251 NODE_4730_length_571_cov_13.136602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 62 29 96.6 40 ............................N NNNNNNNNNGGGTATGAGGGCGCGATCGTGGTACAGGAGG 131 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 192 29 96.6 40 ............................N NNNNNNNNNAAAGGCCCGCCAATGCGGGCCGATTTATCCC 261 29 96.6 39 ............................N NNNNNNNNNTGGCAACTGAATGCCCGCCGTATTGCCTTT 329 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 390 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 451 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 512 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.0 35 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //