Array 1 1-1217 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000010.1 Campylobacter fetus strain 2016D-0237 NODE_10_length_11010_cov_30.043081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 67 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 134 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 200 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 266 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 332 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 398 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 464 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 530 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 596 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 662 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 727 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 793 30 96.7 36 ...............G.............. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 859 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 925 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 990 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 1056 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 1122 30 96.7 36 ...............G.............. CCCAAAGCTGCTACCAAAAATCCATAACCGATAGTA 1188 30 70.0 0 ..........A....AGC.CA.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 97.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : | # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTAAACCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 47-1716 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000021.1 Campylobacter fetus strain 2016D-0237 NODE_20_length_1716_cov_41.061013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47 30 96.7 35 ...............G.............. AATATGAGGCAAGAAAAACAAAAGGAGGTTAGATA 112 30 96.7 36 ...............G.............. TAAAAAAGCATAGCTAGGGCGTCTAACTCATCCGGG 178 30 96.7 35 ...............G.............. TGGGAAGAAAGAGAGTATTATTCTTCTCGTATAAG 243 30 96.7 35 ...............G.............. AGCTGACTTGATAGCTAGTCGTATTAAAAAAAGAG 308 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 372 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 437 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 503 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 568 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 634 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 699 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 766 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 832 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 898 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 963 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 1030 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 1096 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 1162 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 1226 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 1292 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 1358 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 1423 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 1489 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 1555 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 1621 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 1687 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 98.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : | # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 46471-45981 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000014.1 Campylobacter fetus strain 2016D-0237 NODE_7_length_50977_cov_37.105167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 46470 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 46405 30 100.0 36 .............................. TAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT 46339 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 46273 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 46208 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 46142 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 46076 30 100.0 36 .............................. ATTTATATTTGCTGATTGCCAAAGAGTAAGATACGT 46010 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.6 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNTGTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACGATAAAACCCCTGATATAGATATCGTAAATTTTAGGTTTCAACACAAATATTGTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACTTATAGAAATATTGGAGATAAAATGACAATTAAAATGTTTCAACACAAATATTGTCATTAGCAAACTTTACTTTCTCTCCAAACTCTTTTAACTTATCACTAGTTTCAACACAAATATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTAGCAAACAAAGATTTACACAATCTTAATTGTGTCCTTGATGA # Right flank : CATAATAAACTCATCATCTAATTAAATTTAAAAAGAAATTTAATTAGAAATTGAAATAAGAAATAAATTTAAAAAACTATTTAAAACTATTGAAAATGGATTATTTGTTTTATATATAATATAGCTATAAATAATAAAAATAAATTTATTTTCCAATCTAAATTTAAAAAATAACAATAATAAGTTAAATATCATAAAAAACATTAAATTTAAACTATTTATCTATGTTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGTAATATAAAATATAAATTTGTGATTGTTGGTGTGTAAATAGTTTTATTAATATGAACTTGAATTTTAATTATTTAAATTTAAAATTTGATTATTTGAACTTAAATTTGAACTTGAATTAAAACTCAAATTTAAATTATTCAAATTTGAGTTTAAACTTGAATTTTGATTATCTAAATTTAATAATTTAAATTTAAATTATTTGAACTTAAATTTAATTATTTAAATTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 46670-46897 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000014.1 Campylobacter fetus strain 2016D-0237 NODE_7_length_50977_cov_37.105167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 46670 32 100.0 34 ................................ ATTTTAATTGTCATTTTATCTCCAATATTTCTAT 46736 32 100.0 33 ................................ TTTATAGAGTTAAAGATGATGTCATTCATAGCT 46801 32 100.0 33 ................................ CTAAAATTTACGATATCTATATCAGGGGTTTTA 46866 32 93.8 0 TC.............................. | ========== ====== ====== ====== ================================ ================================== ================== 4 32 98.5 34 AAGTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTATCTGCTGTTTGCTAATGACAATATTTGTGTTGAAACATGATAACACTACTAAACCAGAAAAGCCAACTGATGTTTGCTAATGACAATATTTGTGTTGAAACTCACCTAACTACCGCGGGTGGGGCGTTTAGCGATGGGTTTGCTAATGACAATATTTGTGTTGAAACAACACAATTTCTACGCTTTTTACTAGATTGTAATTAGTTTGCTAATGACAATATTTGTGTTGAAACTCATCAAGGACACAATTAAGATTGTGTAAATCTTTGTTTGCTAATGACAATATTTGTGTTGAAACTCATCAAGGACACAATTAAGATTGTGTAAATCTTTGTTTGCTAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTTGTGTTGAAACTAGTGATAAGTTAAAAGAGTTTGGAGAGAAAGTA # Right flank : CTTTATAGAGTTAAAGATGATGTCATTCATAGCTAAGTTTGCTAATGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTGAAACCTAAAATTTACGATATCTATATCAGGGGTTTTATCGTTTGCTAATGACAATATTTGTGTTGAAACATTCTTGTGTTGCTAAACCAGACTCCACTTACTCTGTTTGCTAATGACAATATTTGTGTTGAAACTGAAATGGTATATAAGCATCAGGAGAGAGTTTGCTGTTTGCTAATGACAATATTTGTGTTGAAACTTGTCGAATGCCTCTTCTACCACTTCTAAGTAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 47252-47092 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000014.1 Campylobacter fetus strain 2016D-0237 NODE_7_length_50977_cov_37.105167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 47251 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 47186 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 47121 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : GATAAAACCCCTGATATAGATATCGTAAATTTTAGGTTTCAACACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACGATAAAACCCCTGATATAGATATCGTAAATTTTAGGTTTCAACACAAATATTGTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACTTATAGAAATATTGGAGATAAAATGACAATTAAAATGTTTCAACACAAATATTGTCATTAGCAAACTTTACTTTCTCTCCAAACTCTTTTAACTTATCACTAGTTTCAACACAAATATTGNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 322052-321355 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000019.1 Campylobacter fetus strain 2016D-0237 NODE_2_length_323330_cov_34.962172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 322051 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 321985 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 321919 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 321853 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 321787 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 321720 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 321654 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 321588 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 321517 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 321452 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 321384 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 96.1 37 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TACGTTTGCTAATGACAATATTTGTGTTGAAACGAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCTGTTTGCTAATGACAAGATTTGTGTTGAAACACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGGGTTTGCTAATGACAATATTTGTGTTGAAATTTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAAGTTTGCTAATGACAATATTTGTGTTGAAACATAATTATTGAAGAATATTTTTGTTTTAGACTTCTGTTTGCTAATGACAATATTTGTGTTGAAACTTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATTGTTTGCTAATGACAATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 323269-322256 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZE020000019.1 Campylobacter fetus strain 2016D-0237 NODE_2_length_323330_cov_34.962172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 323268 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 323203 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 323138 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 323072 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 323005 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 322940 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 322873 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 322807 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 322742 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 322677 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 322613 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 322548 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 322482 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 322416 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 322350 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 322285 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATTGTTTGCTAATGACAATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCCGTTTGCTAATGACAAGATTTGTGTTGAAACAAGATTTCTATTAATAATCAAATTTTAGAGGAACAAGTTTGCTAATGACAATATTTGTGTTGAAACGGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGGGTTTGCTAATGACAATATTTGTGTTGAAACCTTTGATGATAACTTTTTGGCTCTTTTGTGTGATATGTTTGCTAATGACAATATTTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCCGTTTGCTAATGACAAGATTTGTGTTGAAACTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //