Array 1 788138-787866 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE332517.1 Treponema medium ATCC 700293 acAqN-supercont-complete, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================== ================== 788137 25 100.0 74 ......................... ATTCTGCAACATCATGAGCGACCTGCACATATTCGCCGCTATTAAACTCGAAAACCATTGTCATCTGAATACCT 788038 25 96.0 50 ........................T CATAATAATCCTCCTATAGATTATCCGTGTAAGTTATTACTCTAAAAATC 787963 25 100.0 48 ......................... GCATTTCGACAAGCTGAGAAGGCGTGTAGTAATCCCACTCTAAAAATC 787890 25 84.0 0 ...................CTCT.. | ========== ====== ====== ====== ========================= ========================================================================== ================== 4 25 95.0 58 AGACCTGCTTTAAGGGATTAAGACA # Left flank : TCAGACCTGCTGCGTGAAACCAGTGGCGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACCTTCTT # Right flank : AGAGTGTACCTCCTTGTACACTCTTGAGGGCGAGTTTTTGCTCAATACCGCCATGGATGGCGGGCATATCAAACAGAAACGATGTTTTACAAAAATTCCATTTTTGTGAAACTTGCAAGGTAATGAGCAACACGGACGTTGCACATTACCGTAACCTCGCTACTGCGTGGAACCACGCCCGTCCTTGGGCGTTCTGAAGCAGAATTATGCTCACACGCTATGGGCGTTGAAGTAAATATATGGAGGAATTTATGTCTGAAAAATTTGATGAAAAGAAAAAAGTTAAAGCAAGTGAAAAATTTGAAGGCTTCAAATCATATCAATATACAGATAATGATTTTGAAAAAGTATTTAAAAATGAAGAAAAGATTAAAGAAAAAGTAAAAAAAGGAAATTTTGGAGAATATGCTGATTATATACCACTTTTCTTTGAAATGTTGAAAGATGTTTTTTCTGGAAAATATAAAGAAGTTCCTGTAGGTGCTATTGCTGCAATAATA # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACCTGCTTTAAGGGATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 788937-788685 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE332517.1 Treponema medium ATCC 700293 acAqN-supercont-complete, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 788936 33 100.0 42 ................................. GAACTTATCAAACTCATCGTTGTAAACTGTATCATCATGGGA 788861 33 100.0 38 ................................. GAACCGTCTACGACTTGGATTGACTTGGAGCTTATTCT 788790 33 93.9 40 ....G....A....................... TGTTAAGCCCTTTCCGACGATATTTGGAAGAAGATTTTCT 788717 33 90.9 0 .........A......AC............... | ========== ====== ====== ====== ================================= ========================================== ================== 4 33 96.2 40 CTAAAAATCTGACCTGCTTTAAGGGATTAAGAC # Left flank : ACAACACTCCCACAAACACGAGCATCAGTATATTGACGAGATAGTGTTTCTTGCATCTTTCGATTCTTTCGTCTTTAATGTTCTCAAATGATTCTTGTAATGTCATTGTTCCACCCCAAGAATATTTTACCATCTTTTGTACCGTGTGAGCTACTGTTTTTTTGACACTATTTATAATGCGGAATCCCTGTACCACATACCAGCCATATTTACCCTAGTTTTTTTCTATTTTTTCTGCTTGCCCTTTCTAAAGGAGGTGTGATAGAATAAAAGCATAGGTTTTAACTGCTTTTTGACAAAATCGCAAACCTCCAAAAAGTGTCCAAAACCCGCTTTTTAGGGGTAGGTTTGCGAAAATATATAAGTCTTTATTATTACAATGATTACAGGATTCATTATATCTATTTTTTCTATTTTTTTAGAGATCGCCCCCGTTTTACCAGAGGTTTTCGAAAACATCTTTCTAAGTCGATACCTCACCGAGCCTTACCCCACGCGCT # Right flank : CTTGCAAGCCTCCAGCTCTTAAAGCGCTTTTTTGCTTCCTCTAAAAATCAGACCTGCTGCGTGAAACCAGTGGCGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAATCTGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //