Array 1 53443-54268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000014.1 Megamonas funiformis strain DSM 110965 seq14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 53443 30 100.0 38 .............................. TCATAAACAACGCCTGCTACACTTTCTACCATTGCCAT 53511 30 100.0 35 .............................. TTGCCATGTCTTCGCATTACGTCTGCCACTATATC 53576 30 100.0 36 .............................. ATATCTATGCTTAGGTGCTTCATTTTACCGCCTCTA 53642 30 100.0 36 .............................. TTGCTTATTATCTTTATTCCGCGTTCTTTTCTGTAG 53708 30 100.0 37 .............................. GATATGCAGCTTTTTAAATCCTTTAATTCTTTTAGCG 53775 30 100.0 36 .............................. TCCACAACGTAGACTGTATCAACATCTTTTGGTAAC 53841 30 100.0 36 .............................. GGGGTTGAGCACCCTGTATACGACCATGTGTATAAG 53907 30 100.0 36 .............................. TAAATAACTGCATATTTCATACTTAAATTACCTCTC 53973 30 100.0 35 .............................. TCTAATTCCATGTTTTATCCTTCTTTCCTTGTACT 54038 30 100.0 36 .............................. ATCAGTAGTCATCATCATCACCCCACATATCGCCAA 54104 30 96.7 37 .................G............ TTGTATCAGCGCCTTTTGTATCGCCTAATGCAAACAA 54171 30 96.7 38 ...............T.............. AAGGATATGAAGCCATTAGGTAGAAGACGTGAGAAGCG 54239 30 86.7 0 ...............T.......AA....G | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 98.5 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAACTCTGCCATATCCTCATCAATAGTTCTGATGGTCAATGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATAATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACTTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATTCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTTATAAACCTTAATCTTTAAGGG # Right flank : GACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCCTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGCGTATTTACTCCTATTGATGTATACTGAGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAATGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAGATTCCAGATAGCGACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAGTTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 16188-17135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000001.1 Megamonas funiformis strain DSM 110965 seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16188 30 100.0 36 .............................. TTTGTTGATTGATATATCCAAGAATAAAATTTAGTT 16254 30 100.0 36 .............................. GCTAAAAGGATTGATAGGGGTAAAATACAAAAGAAG 16320 30 100.0 36 .............................. GGGTTACGTTGAATTGAACCACTTAAGTTCCTTTCA 16386 30 100.0 36 .............................. TGTTTAGTATACAACAAGATAAGGAAATATTTCAAG 16452 30 100.0 36 .............................. ATAAAAAATTTTTGCTCTTAATATAAAAAATCTCAT 16518 30 100.0 35 .............................. AATATAACATTTCCAAACGTTCCTATAAACATTTT 16583 30 100.0 36 .............................. GCTCATTATTTTTATCTTTCTTTGTAAATAGTCTTT 16649 30 100.0 36 .............................. AAATTCTTTTTACTTACTACGACCATGTTTAAGTCC 16715 30 100.0 37 .............................. GGAGTTAGTTTTTCCTCAATAAATCCAGTTTCTTTAT 16782 30 100.0 36 .............................. TGCAAATATTCTAGCTGGCTGGCACAGTCCGCCAAG 16848 30 100.0 35 .............................. ATGGAAACTCTATTTAAAGCTTCCATTCTCTTTTC 16913 30 100.0 35 .............................. GCCGTAAGCTTTAAAATTTGTTCGTCTTTCATTAA 16978 30 80.0 32 ......................GAA.A.TG ATGATACAACCTGCATTTACATTAAAAGGCAG 17040 30 100.0 36 .............................. AAAAATCTGCTTATTAGTTGCTCAATCCATTCCTAG 17106 30 83.3 0 .......................CGAA..A | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 97.6 36 ATTTAACTTTAACAATCGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGCGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAATGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCCAATGAAGTTCATGTTGCTGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAACGTAAAATAATTCTCTAAAGGCATTTGTGTAAACAAGTGCCTTTTTATTTTACCAGCCATTTTTTAGTTTAAAACCTGAAATCCTTATAAATAAAGGATTTATTAAAAATCAAAAAATCAATCTCAATCGCTGGTAAAAAATCGCCTAAATATTGATATTTCAACCTTTATAAACTATAATAATTTATAAAAGTATTTATTTTACTGGC # Right flank : ATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTTTTATGATATAGAAAAGAAAAAGTTTATTAAAATTGGTACTGCTACTGAACATAATACACCATTAATCACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGAAGCGTTGTATCTTCACTTGTAGCTCCTGCCGCTGCTATCGCTACATATGGATTTAAATATTTTACTAATATTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTTAAAAAGGCTATTGTGCCTATCTGTGCATTTACAAGCGACTCGAGCATTACACCAGATAAACTATACCAACCCATAGATGCACCAATAGATAGACTATAAACTAAATTCATATTAAACAGATAGCCACAAATCATACCGCCAAAAATAGATCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATCATAATTTTTTATCTTCTCAATTATAGATTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAATCGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 5517-4428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000017.1 Megamonas funiformis strain DSM 110965 seq17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5516 30 100.0 35 .............................. TAAAAAAACAAGTATAAAAGAAGCAAATATAAAAA 5451 30 100.0 36 .............................. GCTCGATATACAGCATTAGAACTTTTAACGTGGTCT 5385 30 100.0 36 .............................. TATTCTTCTCCTTCAGCTTCTTCTATTTCTTTTGCG 5319 30 100.0 34 .............................. TCAACTGTTGCTCCTAAGCCAATTAATTTATTAA 5255 30 100.0 37 .............................. TTGAACAGTCAAATAACGAAGCTAAAGACACAGCTGA 5188 30 100.0 35 .............................. TTTAATGATAGCAGCTTTAGAAATAGAGTTGTTAC 5123 30 100.0 36 .............................. TGACCATAGCAATTACCCAATGTTACTTCCAGACAG 5057 30 100.0 35 .............................. TATCATCAACAAAATCTATACACATTTTACCACCT 4992 30 100.0 36 .............................. GAACAAAGTAATAATGTGGCTGTTAAAGAATTATCA 4926 30 100.0 38 .............................. TGAAGCCGACTACAATGGGTGAAAATATTACAAGGTGG 4858 30 100.0 36 .............................. ACACGTAGTGTATAAAAAAAGAGCTTTCGTAGCTCT 4792 30 100.0 36 .............................. GGAAATGAAGCTAGTGAAAGATTGATTGAACATGGA 4726 30 100.0 36 .............................. GATATTGGTGCTACAGTTTTGGGCGGAGTGATACCG 4660 30 100.0 37 .............................. TCTACATCTTTTATAATTTTACCTACACTATATTCAC 4593 30 100.0 37 .............................. GCAATTCCACATAAGGCTTTTAAACCTCTAGACCACA 4526 30 93.3 37 ...............T............G. TATACAAACGTTATGTGGTAATGTAATTTTGCAAAAA 4459 30 80.0 0 ............T....TAC........CA | A,T [4431,4435] ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.4 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGTGGTATTGCAAGTGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTAGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTAATAAATAGCCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTATATAACTAATAAAAATCAAAATCGCCTGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : AGAACAAAGAAGAATTTTATTTTATGGAAAAATTATATTATATTGGGATAAGGAAGGTGAAAAATTGACCAAGAATAAATAAAAGGAGTTTTGTAAATGAAAAAAATTCTTATTATATTTTTTTTATTATTTGTTTTTTGTGTTCCAGTATCGGCTAATACTGTAACTATTTCTGATGATTTATTCAATGCTACACTAAATACATCTAGTCCTATAAAAAGTATATTTCAAAATAGAGCATTTCCGTTATCTATAACAACAGAAGACAATACGATTTATACTTTTAGAGCCAAACCAATTACAGATAAAATATTATCTATACATCATATTCCACTGGATATAAATAATGATAATTTTCTTGATGAATGGAAAAACAATATATTAAATAATATTAATGGTATATACTATATAGAAACTATACCTATAAAAAAGGGAATTATTTACATTACTAGAGATAGTAAAAAATCATATATATATACTATCTATATAAAAAATAATTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 35953-36311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000002.1 Megamonas funiformis strain DSM 110965 seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 35953 31 100.0 33 ............................... TTTTCTTCGGCTTCATCTAGCCAATATACAGAA 36017 31 100.0 35 ............................... AAAGATATGCTAAATTGTATTGTTTATATTCTGCC 36083 31 100.0 35 ............................... CTGTTCTTTATATCAGAATCCAAATCTATTTCTTT 36149 31 100.0 35 ............................... TTGTCTTTTAAATACTGTTCTGCTTTTTTATAGGC 36215 31 96.8 35 T.............................. CATTCTGGATTGTTACACTACTAATTTTTACATTC 36281 31 87.1 0 C.......................TT....A | ========== ====== ====== ====== =============================== =================================== ================== 6 31 97.3 35 AGATAAATATCAACAGATGCTGTACGAAAAC # Left flank : ACTTAAATTTTTGCCTGCTTTTACTTCATCAAGAACTTGCTTTGTTTCATTATTAGGATTTAATGTTAAAGCAAAAGGAATGCCATTATTTCTAACAACAGCATTTAAAAACATATTTACAGCTGTAGAAGTATTTAATCCCAATAAAGATAAAATTGCTTCAGATTGTTTTTTTAAATCTTTATTAACTCTTATATTTAACGTTGTAGTTTCAGACATATATATCACACCTCTCAATATTATTATATATAAATTTGACAAAAAAATATATAATAAAGACAAAAATTGACAAAATTCATAGATTTTTCATCATATATTTATAAATATTCTTTAAAATAAAATTTACCAACCTAAAATTTATAAAATCTTCACAAAGCTTAATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTACTGGTAAAAATTATAAAAATCTTGCAATATCAATAGTTTATAATTATAATGTAATTAATAAATCCTAATAACATTAG # Right flank : AAAGTCCTCTTTATTAGATAAGAGGACTTTTTTATTCAAATTTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATCATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGCGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCGACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCTAAAAAAGCTGGTGCTGTTTTTGCTTATGGTGCCTTTTTAACAGATTTTCTCCAATTCTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAACAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAAAATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATAAATATCAACAGATGCTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 9596-10278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000039.1 Megamonas funiformis strain DSM 110965 seq39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9596 30 100.0 36 .............................. ATTCTAATCAATTTTTGATATACCAGCTATAGCTGA 9662 30 100.0 35 .............................. GAAATAGAAAATAAGATTTGGGAAGCAAATGACTT 9727 30 100.0 35 .............................. CCGTACTCACCACAGGCAAAGTATCGAATACCTTC 9792 30 100.0 36 .............................. AGAGCTAGAATTGATTGAAACTTTTTCGGACAATGA 9858 30 100.0 35 .............................. GACGCTTGTCTGACAATATGAATAAAGTGTCTGAC 9923 30 100.0 35 .............................. TATGATGGTTTAGCTTGGCAGACTAATAAAGCTGA 9988 30 100.0 35 .............................. CAAGGAAATATGGTGTATCTGAAGGGTTCATAACA 10053 30 100.0 36 .............................. TTAAGCATTATACTTTTTTTAGCTCCACCTGATGCA 10119 30 100.0 34 .............................. TCTGCACGCCCACCTTCTATGTTTAGCAGGACGA 10183 30 100.0 36 .............................. AAAAAATTAGTTAATTTAAGTTTAAAGTTTAGATTT 10249 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 100.0 35 GATTAATAATAACATAAGATGTATTTGAAT # Left flank : TAAAAAATTTGAAACATGAACAAGATATATATTTTGAAAAACATATTTATACCAATAAATATAATTTAGTGTTTTGCACAACTAAAGGAGATATGTATAATCCTAATAATTTACTCCAAAATATGAAAAAACGTTTAAAAAAATTAGGATTACCTACAGATTTGCATATACATTCAACACGACATACATTTGCTACAAATCTTATTCATAATAAAGTAGCTATTATAGATATACAAAAACTTGGTGGTTGGTCATCCCCTGATGTTCTTTTAAATATATACTCCCATACAGTTCAAGAAAGTCAAATAAAAGCTATTAATGCACTATATAAAGAATTCAATGATTAAATTTTACCAAGTAAAAATTTAAGAAATCAGTTATGATAATAGTTTATAACTAAAAATGTATTTATGTTAATTAGCTGGTAAATATCAAAAAGATGCTTGATATTTAAGTATCTTTTTGATATTATTAAAATATAAATAGTTAATTTTTAAAGG # Right flank : TAAAAATACAGACATTGATATTGAACAAAAGAAAAAATCTCGAGGTAGTTGACAACTTCTCGAGGTTTTTTCTTTTTTCTTTTGAATGGGGATAAAATAAAACTTTGCTTTTCTTTTGGCACATTTTAGCAATAACAAAAAGACTACAAGGATAAACAATGCAGCACAAGCTGTCCTTGTAGTCTTTTTTTTTATTGCTATAAAATTTGTGCGAAAAGCGACAAAAAATAGTCGCAAGAAAGGAGAACTAAATACTATGATAATTGCTATTTCTATTAGTAATAATGACAAAATGAGATTAATTAAGGAGGCAATAAATAAAATAGATCCTAATTCAGTAATCTATGAAAAAGAAAAAGATATTATTAATATCTTTGATAATGATTGTATTATTGATGAAATTTATAATAATTATGAGGATAAAAATTATGAAATCACAGAAAATGAGTTAAATGAAATAGTTAAAAAAGTTTGTAAACTAGCAAGTGATGAAGGATTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAATAACATAAGATGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2816-2392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000004.1 Megamonas funiformis strain DSM 110965 seq4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2815 31 96.8 33 C.............................. CCGCCTTTATTTTGCGTTATGGCTTGTAATACT 2751 31 100.0 35 ............................... AATAATAAAGCTTAAAAACTTACTTCACATTTTAT 2685 31 100.0 36 ............................... TTTAAAATTATTAAATACATCTTTTACAAAATCCAT 2618 31 100.0 35 ............................... ACTTCTTGTGTTGAAATTATTTTATCTGCTGACAA 2552 31 100.0 35 ............................... TGCGTGGAAACAGGGGCTATTACAGTAAATGAAAA 2486 31 96.8 34 C.............................. GCGATTACTGATGAAAAGATATATACTTCTGTAT 2421 30 74.2 0 T...............TT..A-.....CT.A | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 95.4 35 AATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAG # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCAATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : CATTTAACTTTAACAAGAGTTGTATTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 8408-8183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000015.1 Megamonas funiformis strain DSM 110965 seq15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 8407 26 100.0 40 .......................... ATAGCACTTTGAATAATGTGCTTGAACAGCTTGACATGGA 8341 26 100.0 41 .......................... CTTCTGCAATGAAGTAATGTAGATTTACCAGAACCACTTGG 8274 26 100.0 40 .......................... GCACTTACAACGTTGTTTAACACAGCAAGTGCTTTATTGA 8208 26 80.8 0 ...................TAA.G.A | ========== ====== ====== ====== ========================== ========================================= ================== 4 26 95.2 41 GTTAAGCATTAACATTGTACGGTCTC # Left flank : TAAAAATTTTTTAAAAGCTATGCCGAATTTTGGAAAAAGCAGGAGATATAATATATAGAATAGATATTAAAGAGGGCGATAAAAAAATAAATGAATATTAAATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACTAAAATTTGTATTCCAAAAGGAGCTTTCGGTGGAAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAATATCAAGCATTAAAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAGGCTATAATGAAGGAAAAGAATATTGATTTTACTGCG # Right flank : ATTTAGATTGTAGAATTATGCTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACTGTGCCGAATTTTAGAAAAAGTAGAGGATATATAAAATAGAAAGCAATAAAAATGTAAATAGAAACACTCCTTTTGATTTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAAGAATGCCAAATTTTGGAAAAAGCAGAGGATATATAAAGTAGAGATTAAAGATGATAATAAAAAATAAATAGGAAATAGAAAAAAAGATATAACATAGATAAAAAATTTAAAAAACAATGCCAGATTTTAGAAAAAATGGAAGATATGTATATTAGAGAATTGATGAGGTGGTAATCATGAAAACTTGGATGAAAAATTTAATTTTATCAATATTGGCTATAATAGCAGTAATT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 11434-11143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000015.1 Megamonas funiformis strain DSM 110965 seq15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 11433 30 100.0 35 .............................. AGTTATCACCCTCTACTGGCTCAAAGTGCATAGGT 11368 30 100.0 35 .............................. TATTCCATGGATAGAAATATCTGGCACTTAAGCCA 11303 30 100.0 36 .............................. AGAATTTGCAATTTTATTTAAAGCACCGGCAATATC 11237 30 93.3 35 ..........................G..A CGCTGTTGGACGTTTAGTTAGTTATTTATTAGGAA 11172 30 83.3 0 ....................AA.G.GA... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 95.3 36 GTTAAGCATTAACATTGTACGGTCTCTTTT # Left flank : TAATCGGTGGCAAAGAAGATATTATTACCTGTTACTTTGCAGATAAAGGTAGTAAGGAAAATTGCTATGATTCATATTATCCAAGTACAGATTTATTAAATAAACAGATAGATAAATGGCAAGATGATGGAATAGATTTTTATGGAATTTATCATACACATTTTGCTGGTGATGATGGTTTATCTAGCAGTGACCGTAGATATATTGTCAATATAATGCAAGCAATGCCATCACAAATACAGTATTTATATTTTCCTATAGTATTTAAAAATAATATGCTTATATATAAAGCTGTACGTGAAAATAATATAGTGAAGATAGTTCAAGAAGATATTGAAATAGTTTAAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAGAAGGATAGGCAGAGAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGC # Right flank : AGATTGTAGAATTATGCTAAATGTATTTATGATGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTAAAAAAATATGCTGGATTTTAGAGAAAGTAGATGATATATTATAATAAAAAGTAATAAAAAATGTAAATGAGAAAATTTTTTGAATTTTATATAAATAGTATTGGGTTTTAAAAGGAATTTGTACAGTAAAAATAGTAGAAATTAGTAATATTATAAAAAGGAGAAATATAATGAAGTTTAGTAGATTTAATATTTATAAAAAATATAATGATAATGAATATTGGATTTATAATACACTTACGACAGCTGTTGTTTTAATAGATAAAAATATTTTTGAAAAAATATTTTTAAAGAAAAATTTCGATATAGATGATGATAATTTTAATAAATTATCTGAAATGGGTTTTTTTATTGAAGATAATTTTGATG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 13205-13429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000015.1 Megamonas funiformis strain DSM 110965 seq15, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 13205 30 100.0 36 .............................. CGCAGAATACTATTTAATGCCTTTTTTTGCAGAAAA 13271 30 100.0 35 .............................. CCAGACAGCGACCCGTTAGAGCCTTTTAATCCTAG 13336 30 100.0 34 .............................. ATGGCGGAGATTTAAATAAAGAGCAAAAAGTTGC 13400 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 ATTTGAGACCGTACAATGTTAATGCTTAAC # Left flank : TTCCTTCCGAGCAAAGCAACCGCGTCTTTCTGATGGATAATACCAATCATCATAATAACTACAAAATGCTCTACCGCTCGAGTCTCTATTATATTCTTCCTAATACCGACAACCTGAACAATTTCCACCTAAAGTTCCTTTTGGAATACAAATTTTTGTTTTAATTTCATTTGCTTTGTTTTTCATAATACTAGCTCCAATCTTAATCAAAAATTTTTAGATTACCTTTAAGTTTAATATTCGTTTATTTTTTCATCACCCTTTTTAATCTTTACTATATATATCCCCTGATTTTTCCAAAATTCGGCACGGTTTTTAAAAATTTTTATAAAAAAAGACATAACTTTAATCTAAGTTATGTCTTCTTTCATTTTACTGCTAAGCATCACTTGTTAATATTAATCAATAATTCACCATAAATACATTTAACATTATTCTACAACCTAAATCACATTGCACAATGTTAATGCTTAACTATAATATGGAATCTTAGGATAGTG # Right flank : CCGCAGTAAAATCAATATTCTTTTTCTTCATTATATCTTATATATCCTTATTTTTCAATCTTTCATAGAAATCTTACCAGCCGATTTCAGTTTTCTGCCTATCCTTCTTAATGCTTGATATTATAGACTTTTTACTCTTTCTGCTGATAAAAACTCATTTTTTTAATCACCCTTTTTAATCTTTACTATATATATCTCCTACTTTTTCTAAAATTCGGCATGGTTTTTAAAAATTTTTATAAAAAAAGACATAACTTTTAATCTAAGTTATGTCTTCTTTCATTTTACTGCTAAGCATCACTTGTTAATATTAATCAATAATTCACCATAAATACATTTAGCATAATTCTACAGCCCAAATTACATAACTTCTTGTTAATGCTTAACAAACTCTATAAGCAGTTTCGGCTATTGGTCATGTGAGACCGTACAATGTTAATGCTTAACTTTGGCGGCTGAAATTTCAGCTACCAAATTTTACCAGGATGAGACCGTACAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAGACCGTACAATGTTAATGCTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 14138-13847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKG010000015.1 Megamonas funiformis strain DSM 110965 seq15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 14137 29 100.0 36 ............................. AAGTTTTAATACTAGGAGTATAACCTGCCACCATGT 14072 29 100.0 36 ............................. AAAACTCCTGTTTGTGATAGTAGTGCTTTTTGGATT 14007 29 100.0 37 ............................. CCGTGCTCTAAGGTAAGCATCTCTTATAGCCATTTGA 13941 29 100.0 37 ............................. CTGGTAAAATTTGGTAGCTGAAATTTCAGCCGCCAAA 13875 29 93.1 0 ...........................CA | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 37 GTTAAGCATTAACATTGTACGGTCTCATC # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGGGAATAGACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGGTAAATAACGTTTTACAGAATATTCGAGGAGTGAATTCAGCAAGGGTAAATAGTTATAATGAAGGTACAGCAACCATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGCAATCTTAAACTACAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAACCTATAATATCAAGCATTAAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGGAAAAGAATATTGATTTTACTGCG # Right flank : TGACCAATAGCCGAAACTGCTTATAGAGTTTGTTAAGCATTAACAAGAAGTTATGTAATTTGGGCTGTAGAATTATGCTAAATGTATTTATGGTGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACCATGCCGAATTTTAGAAAAAGTAGGAGATATATATAGTAAAGATTAAAAAGGGTGATTAAAAAAATGAGTTTTTATCAGCAGAAAGAGTAAAAAGTCTATAATATCAAGCATTAAGAAGGATAGGCAGAAAACTGAAATCGGCTGGTAAGATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCGGTTAAGCATTAACATTGTACGGTCTCAAATGCAACTTTTTGCTCTTTATTTAAATCTCCGCCATGTTAAGCATTAACATTGTA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //