Array 1 54058-53370 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB976087.1 Escherichia coli KTE33 acHXS-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54057 28 100.0 32 ............................ AACATTATTTGGCCCAAAGATAATAGTAATAT 53997 28 100.0 32 ............................ GAATCCAGTTGTCGTGGTACGCACGGAACACT 53937 28 100.0 32 ............................ GTCATCACAAGACCAGCTACAGCCGCCGCATC 53877 28 100.0 32 ............................ GCCTTCCATGCCGCTGACGCGGCATCAAAAAA 53817 28 100.0 32 ............................ CCAGCACCAATTGCTGGGGGTTGCCCTCATTT 53757 28 100.0 32 ............................ CTGTTGTATTCAGCCATTCTCCGGTCATCTGC 53697 28 100.0 32 ............................ TCTTTCAGCGCAACCATGGCATTCTTGCCGCC 53637 28 100.0 32 ............................ ATCAGCAAAACCGGCAACACAGACATTTGAAG 53577 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 53517 28 96.4 33 .............T.............. AGAATGCTGGCACTTAGTCCAACAGGAAATCTT 53456 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 53396 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTTGTTTGTTTGGTTATGCATTGTTCACGCGGTTCATCCGACCAGGATTGTGACTATACATGTTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTCAGAGTGAAATGTAACTCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGTTATTATTCCA # Right flank : ATCCATACCCCAATATTTATTTTCTTCCTTAACTCCAGATGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64180-63310 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB976087.1 Escherichia coli KTE33 acHXS-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64179 28 100.0 32 ............................ TTACCATCCCACACGACTCTGAGTTCATGCGC 64119 28 100.0 32 ............................ TGGCGTTGTCCTGGTCACTGTCTGGATCGGGT 64059 28 100.0 32 ............................ TGCCGGTCCCCGGACAGAGCACAAAGGAAGTC 63999 28 100.0 33 ............................ CTGCTGCGCCTGCCCTGTTGTTTCGAGATGATC 63938 28 100.0 32 ............................ TATATGCAGTACACACCCGAACAGGCACGTAG 63878 28 100.0 32 ............................ TCTCGCGATGCCGAAGACCATGTAGAATATGT 63818 28 100.0 32 ............................ TCGCCGATCAAATCGAGGCACCAGATGTGCTG 63758 28 100.0 32 ............................ TAAGTACTGCCAGCAAGCTGTCAGTACTAAGT 63698 28 100.0 32 ............................ CGCTGGCTGGCTGGTGTTGACGCGGTGCGGCA 63638 28 100.0 32 ............................ GCTAATCACGACCAGATCCTGTCCATCCTGGC 63578 28 100.0 33 ............................ CTGTTGCGCCGCCGCACCTTTGTCTTTAATTTC 63517 28 100.0 32 ............................ AGAAGGCAAAGCCTGGCTTGTGAAACGGCTTG 63457 28 100.0 32 ............................ GATCTGGTGTACTCCCCTTACGTCAAATAATA 63397 28 100.0 31 ............................ AACGTAGAGGACCAGCTGTCGAATGCAGCAA 63338 28 89.3 0 ....................T...C..T | C [63314] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCAGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGCAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCATAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCATATTACTGGAATATCCCCATTGCGAATACCACAGCGTTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTATGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGTCCACAAAGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 123633-123116 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB976094.1 Escherichia coli KTE33 acHXS-supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123632 29 100.0 32 ............................. GCGAGGTTTTCGTATAGCCTGGATTTAATACT 123571 29 100.0 32 ............................. TCGGTGGGTATCAGCAAATTCGAGTGGATTCA 123510 29 100.0 32 ............................. GACCAGACGGCCTCGTTCTCGCTGCCGGATGT 123449 29 96.6 32 ............................A ATAACCACGTTGTTGCAGGCAATAACACCGGC 123388 29 100.0 32 ............................. TTCATCTCGGTGGGGACATTATCGAAACCATT 123327 29 100.0 32 ............................. GGTCTGCCGAACGATGATATTGAGTTCAAGCT 123266 29 100.0 32 ............................. CAAAGGTGCCAAAACGATCGTTGTTAGCGGAT 123205 29 100.0 32 ............................. TAGGTGAACGCGAGAGGTCTGGGTTGATGCGT 123144 29 93.1 0 ............T...............T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGGGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGCCAATGGATTAAGTGTTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATGATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGTAGGGTTCAGCCCGGGCAGTTTCCCGCCCGGTCTTCCTTACTTACGCATTCGACCAGCTCTGGATCGAATCCGCACTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAAAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATACCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCACTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGATCGCCGTTGCGTAATCCGGATACAGACCCAGACCTACCGCTGTATTAATCGCCGCCCCCAAACTTGCACAGCCGTTAATGGCGTTACGCCGTGCCCCACATATCCAGAGCGCAACACCCTAACATAGCGTTACTTAAGGGAAATTAACCGCCGACACACTCTTATCATTCGCCGCGATAGATGCAACCTGCGGTGCAGGTTTCTTTCACCATAACCGCACTTAACAGCGGAACAACAGGTTTAACCTGATCCCAAATCCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : AGAGTTCCCCGCGCCAGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //