Array 1 7748-5953 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGSY01000306.1 Micromonospora arida strain LB32 NODE_23_length_58109_cov_11.6069_ID_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 7747 28 100.0 34 ............................ CAGGACCTGCAGCACCTGCGTCCCGGCGGCGGCC 7685 28 100.0 33 ............................ CGGGACTCCGGTTGCGGAAGTATCTGACTACGT 7624 28 100.0 33 ............................ CCACACCCGGTCGCCGGCACGGAGTACAGCCGT 7563 28 100.0 33 ............................ GGCATGGCAGGAGTGGGCGAAGACCCACCCGGA 7502 28 100.0 33 ............................ TTATTGCCTGCGGGAACGTCCATCAGTGTCGTC 7441 28 96.4 34 ...........................T CCAGCGCGGCCACACCCTCGGGCACATCCCACGG 7379 28 100.0 33 ............................ GGTGGCCAGCAGCGCCGGCCCGATCGCCGACGC 7318 28 100.0 33 ............................ CGCGACGCCTGAGCTGCGCGCGACTGTCGCCTG 7257 28 96.4 33 .....................A...... GGCGCAGCTGCGGCAGGTGTACGGCGAGGCCGC 7196 28 100.0 33 ............................ CACGCTCGACGCCACGGCGGAGCCGCGCGTGCT 7135 28 100.0 33 ............................ CCGGTACGCGGTCGCGACCCGGGACATCAGCTC 7074 28 100.0 33 ............................ CGCGCCGCCGGCGTAGCCGCGGGCAACCCCGAA 7013 28 96.4 33 ........T................... GTCGTCGCCGAGGCGGTTCTTCCGGGCGACCAG 6952 28 96.4 33 ............T............... GCGCTCGACGTCGCGTCACGGCAGATCGACAAG 6891 28 100.0 33 ............................ CACCTCTCGGGCCGCTGGCCCATACGGCAGTTG 6830 28 100.0 33 ............................ GGCATGGCAGGAGTGGGCGAAGACCCACCCGGA 6769 28 96.4 33 .......................A.... GGGGCCCGGAGGCCCGGGGCCGGAGCGGTCTTT 6708 28 96.4 33 ....................A....... CTTCGTCCGCGACCTCGGCGGCGGCGAATATCT 6647 28 100.0 33 ............................ TGGTGATCCCGGAGGCGATGGCGAGCTGTGCCG G [6625] 6585 28 96.4 33 .......T.................... TTGCTCGGGTCTCCGCCGTCGTACGATTCGTAG 6524 28 92.9 33 .........A....A............. TGGGTTGCGGTAGGGGTGGCATCCTTTGGCTGG 6463 28 92.9 33 .......T......T............. GGCGGTGACAGAGTGCAGCCCCGAGCAAGCTTC 6402 28 96.4 33 ..A......................... GGGCAACCGGGTCGCGCAGAACCCGCCGGGTGT 6341 28 92.9 33 G.........G................. GGTACTGGGTATTGGCCCAGACCGGGCGCGGCG 6280 28 100.0 33 ............................ CTGCCCGGTGGAAACCTCGTTGAATCGGAGGGT 6219 28 96.4 33 .....................T...... GGCGAGCGGGCCGGCTGAGCGCCAGCCATCGTC 6158 26 92.9 33 ................--.......... GGGACTGCACGACCGGCGGGGTGCCTGGTACCG 6099 27 85.7 92 .......G-........A.........T CACGGAGTCGCCGTCGACCTCGGGTCAGCTCAGGTCGATCCCGCACCGCGGGGGTGCTCACTCCACGGTCAGCTCGCCGACGCCGCTGTTCT 5980 28 85.7 0 ...G.....A......T....A...... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 29 28 96.9 35 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCACCAGACCAGCCGTTCAATCACATGCTGTGACGGATCTTCCTTCGCAATCGGGCACTCGAACCAAACGAATACGCGATCTTGCCAGTTAGCCTCCAGTGCCGGTCTCACTCGTATTGGTGGTTCGCCCAGACGGGACCGACAGTCCAAGGCCGCCCCCGCCGTCGGTTGAGTGGCACCATGTCGCCGGGGTTAAGCCTGGCGGCCGGCGAGGGCGATGTTCTGAAGGGGGTTAATGCACGAGTAGGCGTCGGAAGCCTCATACGACCTATGGGGACTTGATCTTGTTCGGGGCTTGTTCAGCTCCAGCCCACACCGCGCGGTGCCACCTGTTTGCCAGTCGCCCCACTTGAACCCCATCAACTACCCTGCAGGGAGTTCGCTTGCCCTCTACTTACTCCCCAGGGCATCGCGCGGACGAGGATGAAGTGAGCCAGCCTTGCGAAACCTAGTGAATGAAATCTGCGAAGTCGATCTTTGACGCCGCAGGTCAAGAAGT # Right flank : CTATCCCCAGCCGGTTACTGATCCGGTGATCGTCCGTGTCACTTCCGCCGTAAACGACTGTTGGCGCTCTGCCACAGCTCCACGTGCTGCCACCTGGAGAAGTTCTCCTCGCACAAGAAAGTGTCGGCGCGAGCTCAACAGCCGTAGGTATGCGCTCGCCCGGACTCTTTACCTGCGTAAGCCAGCAGCAAATTGACATCGCCTTCTTGCGAGCCGCGGATGGTCGATCGAGCGGCGGACAAGCGCGGAACAGCCCCGTCGTAAGAGCGATCGATCGACACTTGCTCAGCCGACTACTCAACGCCAAGCAGCTTGAGGATGGCATGGACAGGCACCAGGTATCGCCGGCCGACCCGCAGAAGGCGCACTGGAAAATCGTTGGTTTTGGCCAGGGCGTAGGCCTTGGTGCGTCCGATTCCCAAGATCGCTCCGGCGGTCTCGATATCGGTGGTGATGCCGAGATCACGTACCGCGTCGATCGTCCACACCTGGTCCTGCGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 28353-26618 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGSY01000110.1 Micromonospora arida strain LB32 NODE_28_length_52236_cov_12.4735_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28352 28 100.0 33 ............................ CGGGTGTGGTGAATCCGAACTTCTACCGGGTGT 28291 28 100.0 33 ............................ CGCCCCGGGCAGCCCGGCGGCCGACGCGGCAAC 28230 28 100.0 33 ............................ GTAGTCGGCAAGATCGAATCGGACGGCGTACCC 28169 28 100.0 33 ............................ CACGAACGGCGCCGTCAACCTCGACTGGGACAA 28108 28 100.0 33 ............................ TCGGCATGATCAGGTACCGGTGGTTGGGGGTCT 28047 28 100.0 33 ............................ CGCAACCGCCACCAACGTTGTCTCCCCGCCGGC 27986 28 100.0 33 ............................ CGCGGTTGCCCGGGCGTGGAATAACACCGTGGG 27925 28 96.4 33 .......T.................... GACTTCCGGAATTCGTCGATCACGTTGACGTCG 27864 28 100.0 33 ............................ TGCCGATGACCGGGTCAGCGTCGGTGACGGCGA 27803 28 100.0 32 ............................ CATGGCGCACCACCCGCAGGGGGTTCCGGTGC 27743 28 100.0 33 ............................ GGTGTCGGCGGTGTCGAGCAGGGCGGCCAACTG 27682 28 100.0 33 ............................ CGTCTTCGCCACCTGCCGGGGGATGGAGAGCAC 27621 28 100.0 33 ............................ CGCCTGGATCGCTCCGTCGGTGATCGGCGCACC 27560 28 100.0 33 ............................ CTAACCCACCCCCGGGCGCCACTACGCCCACCC 27499 27 96.4 33 ................-........... CGCGCTCGCCCCCGGCCGGTCGAAAGCCAGCGA 27439 28 100.0 33 ............................ GCTGGCCGGTACCCGCTGAAGCTGGCGGAGAAC 27378 28 100.0 33 ............................ CTACGAAGACACGATGACCGATGACGAGTTGGA 27317 28 96.4 33 ........T................... GTCGGGCAACAACATCACTGTCCGGTCGAAGTT 27256 28 100.0 33 ............................ CTCGAAGGGCTCGTCGGTGCCGGCAGTGCGAAC 27195 28 92.9 33 ...........C...A............ GTTCGGCGGGTACGCGTTCCAGGACGACCCGTC 27134 28 96.4 33 ...........C................ GTCCTCGTACGTCTTCTTCTGAGCGGCGATCTC 27073 28 89.3 33 ..................AC....G... TCCCCAACCACCAGAGACGTAATCCGCACGTTG 27012 28 96.4 33 .....T...................... ACAGGAATCTTGCGGTTAACAGCCGCCTGCTCT 26951 28 92.9 33 .....G...............T...... CAGGTCGCGCCCATAGTCGATGCACGCCGACCT 26890 28 82.1 34 ............A.T...A.....GC.. CCGGGCCGAGCCTGGCCCGGTTGATCCCCAGCCG 26828 28 96.4 32 ..............A............. GATGGTGCAGATGCTCGGCTTGCCAACGAAGC 26768 27 82.1 33 .C.......A..TG.-............ ATTGGTGAAGCTGTTATGCCGGCGCCCGGAAGT TT [26763] 26706 27 89.3 32 .........AG..........-...... TACGAGCCATTACTGCGCTCGGCTGACGCTCA A [26681] 26646 28 71.4 0 .....A.T.C......TA.TAA...... | T [26620] ========== ====== ====== ====== ============================ ================================== ================== 29 28 95.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGCGGGTCGCTCATCCAGCACCGGCAGCGGAGCCCTGCGCATCGACATCAAACGGCTCGCCATCCCGGTACTGCCGCTAGACCGGCAGCAGGCGTACGGGCAAGCCTTTAGCCAGCTTGTTGAGTTTCGGACCCGACTCGACCGGGCCGCAGCAACCGGGGCCGCGCTCGCCCGCGAAATCGGCGACAGCCTGACCGCCGGGGCCCTCGCCCCTCCATCCTGATCAGACCGACTCCATACGGACCAGGTGTTCGGTGTCCCAGCCACGGATCCCACCACCGCTTGATCGGCGCCGGCGCATGGCCTAACCTCCTCCCGCCGCCGTTGGGCAGCCTAAGCGTTGCTGTTCGCTGTGCCGGAGCCTCAGCAACTACCCTGCAGCAGGGGTCGTTTACCCTCGAGAATAATTACTCCCTGGAACCCGACCGAGCGAGACGATCTTGCGGACCCTAGTGAATGAAAACGACGGGGTTGATCTATAACGCTGCAGGTCAAGAAGT # Right flank : CGGATCCTCATCATCAACGCACCGGTTGCACCTACTCCTCGCGCAGCCGGCGATCCCGCCCGTTCTTAACGGCGTCGAACGCTGAGCGGTGCCTGGCGGAGGCGAAGTTATTCGCGGGATTTGGTCCTTCCGCCAGCGCGGCAACACGGTCCGCCATCATCGCATAGTTCGGAGGTGTCACCACCGGCCGGCGTGCCTGCGAGGGACTGCCCCTCCACGGTTCGGCGGGGTCCTTGCAGATCGATTCGCCGTTCGCGTTGACACCGTTGACTGCTAGAGGGGCGCGACACAGACAGGCCGCGCAGACCAAACCAGAAACACCCAGCATCCTGTCTGCCATCGACCCGCCCGTCGGGGGAGCAGGCCGCCGCCCGGCCCGCCACGGCCCTCGAAGCTCGACACCTCGTTCGTACGCTGGCGGGCCGGGCGGTGGCCTGCTCGGCTTGCCCGGGTCGATGGCGGGCAGGATGTCCTCACCGCAGCCACTCACTGAGCCGGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 45653-44404 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGSY01000110.1 Micromonospora arida strain LB32 NODE_28_length_52236_cov_12.4735_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45652 28 100.0 33 ............................ CACCCTGTACGCGGCGCACGCCGACGCCGGGGG 45591 28 100.0 33 ............................ CGCATCAGTGACGACCGTGAGGGGCGAGAGCTC 45530 28 100.0 33 ............................ GGTCTCCTGTCCGCTGGCGAGGGCGGCGAGCGC 45469 28 100.0 33 ............................ GCGTGGTAGGCGGGTGCCTCAGCAGGCCAGACG 45408 28 100.0 33 ............................ GGCCACCGGGCAGCAGGCCGCGGCGCACCGCCA 45347 28 100.0 33 ............................ GTCAACATCAATGAACTGTGAGTATCCCTGCCC C [45342] 45285 28 100.0 33 ............................ GGTCAGGTGCACGCTGGTCTCGACGGCCTTGCG 45224 28 100.0 33 ............................ TTCGGATGGGGTCCGGCGCTACGTACCTCCACC 45163 28 100.0 33 ............................ GTCCCAGCCCTCGACGTTCCCGTCGTTGTCGGC 45102 28 100.0 33 ............................ CCTGCGCCTGGCCCTGGCCGTGGTGCTGTCCCC 45041 28 100.0 33 ............................ CTTCTTTGGGGTGCATCCATGCAGGGGGTGCCG 44980 28 100.0 33 ............................ CTGCGGTGGCGGACCACGACCGAGCAGGAAGAC 44919 28 100.0 33 ............................ GGACATCGACGCGGCTGCCGTCGCGTGTGAAGC 44858 28 100.0 33 ............................ CGTCATGGCCTTCGGCGCCGGCGTGCCCTGGAT 44797 28 100.0 33 ............................ CATCGCTGCGCGGACGCTGGAACTCGGCGTTGC 44736 28 100.0 33 ............................ CGGTCCCAACTTCTCCAGGTCGCCCCACCCGCC 44675 28 92.9 33 .....TT..................... CACGGTTGCGCGGTACGAGGTCCCGACGAAGAT 44614 28 96.4 33 ..................A......... GGATGCGCGGCCGAATCCGAGTGAACAGGTTCT 44553 28 100.0 33 ............................ TCAAGCGACCGGCCCGCGCGGGCCGTCCCTCAG 44492 28 100.0 33 ............................ CGCGATGTCCTTGCGGTACGCCACGTCCTGCCA 44431 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGCGAAAGCCGCTCGCCGAGGTATCGGAGGCGGTGCGCGCTCTGCGGCTGACCACCGTGTCGAATACAGTCGTACGGGAGCTCGTGTCAGCCGGAGCTGCCGCCTTCAGATATGGCCGGGACTGGTCGACAATGGTGGCCGCCGAGGCGCGGTCTGGCCAGGTGTCGATTCCGTCGGCCACGCCGCTGCGCCGAAGCGCCATTACCGCCACCCAGGCAGCACCTTGACGTGCTGGCGGGCGGAGCGACCCGTCCCTCACATCCCGTACGTGGGTCGACTGCCACCGCCTGGTAGGTGTCGCCGACACATGACCCACCCTCTACTCTCGGCCACGCAATGCAGCGCTCACTCGTCGTCTCACACGAGCATCACCCGCTAGGCTGTAGCCGAGCTCGCTCGCGTAGATAGCCCTACGCCAACCGAGACCGAGTGGAATGATCTTGCGGACCCTAGTGAATAAGAACCGCGAAGTTGATCTATAACGCTCCAGGTCAAGAAGT # Right flank : CGTCGGCCGGAACTCGAAGAACTCCCGCCGCATCTGCTCCCCGGGAACAGCTTCCGCCTCGGGTACGGCACCAATCGCCCTTGCCGGTCCAGCTTCTCTACGCCGGACGTCCGCGCTTCCCAAACCGGCGGCGCCTTGCCGCTTTGCTCCAGCCGCCGGGTATCGCAGGATTGATGATCGGGGCAACTGGGCGACGCATCAAGGTCACCCCGTCGAGATCCACCGGCACCCAGTGATGGTCGTGGGCCAGGAACGAGAGCCTCTGTTCACCGGGAATCTGATAGACCATCAGAGCTCGACCTACGCCTGCCATCTCGGTCACCCGAGTCCACAACCTGACTCGCACCCGGGCGCTTATGTGTCCTACATATACACCTGCGGTCAGTTCCAACAACCACTGCGTCAAATGTCCCCGCAGCCCAGGAGGGCACGCGGTCAGGATGATGACGGTCATCAGAAATCGGCCTCACCGATGTCGGCGTAATTACGGCCGGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 48881-47999 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGSY01000110.1 Micromonospora arida strain LB32 NODE_28_length_52236_cov_12.4735_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48880 28 100.0 33 ............................ CCTTCAGCAGAGTTCGGCGCTGGCGAGGTCCGG 48819 28 100.0 33 ............................ CGACGTCGGCGGGATCTGCTTGTGGTTTCCGCG 48758 28 100.0 33 ............................ CTCGGTTAGACGGCCTTGAGTTCGCGCTTGCTC 48697 28 100.0 33 ............................ CAACACGATCGGGCGGCTGTCCTGGTCGGTGCC 48636 28 100.0 33 ............................ CCTCTCCCACCGTTCGGTCCTTCCTGGTCGGGA 48575 28 100.0 33 ............................ CCGACCCACGTCGACGCCGTGTACGCGGCCGCC 48514 28 100.0 33 ............................ CGCGGGCCAGCGGTCCTCGGGCAGGTCGCAGGT 48453 28 100.0 33 ............................ GCCCGAGTTGCGGGACACCTGACCGCTGTTGGC 48392 28 100.0 33 ............................ GCCCGAGTTGCGGGACACCTGACCGCTGTTGGC 48331 28 100.0 33 ............................ CGTTGGAATCGCGGCCCGAGTCATCGAGATTCA 48270 28 100.0 33 ............................ CCACAACCGTTGGCCGTCGGGAACGTCGATGAT 48209 28 100.0 33 ............................ CACGGCAACGGCCTTGTCGGCGTCGAGCCGGGC 48148 28 100.0 33 ............................ CGACCTGGCGGCGCTGAAGGGTTCGCGGTTGGT 48087 28 100.0 33 ............................ TGCTCGGGCCTCCTCACTGGACAGACTCACCGC 48026 28 82.1 0 .....G...AT..C......A....... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TTGCAGCCGCACACCGGGCCGACGCCCTACGCTCGTCAGAACCGGATGTCTGGAAGGCCCTGTACGACGCCGCCCGAGCAGAGTCCGGAGAGCTTGGCGACTTCGCGCCGTACTGGGTGTTCCCGGGGAGAGCAAAGATCGAGCGGCATGTCCTGCCCTACCCGCTCAGTCGCGACCAGGCGCGGTTCGACCGACTCAAGACGGACCTGGTGCGATACCGGCTCGCTTTCGGTCAACCACGACAGGAAGACCTGCTACTTCTTTTGCAACGGCAGCCTATCGGCGAGACCGACGTACCTGAGGTCCTCGATCTACGTCCCCGGCCGGATGGCAACCAGCTGTAAGGACAACTGGCCGACGACGCGAGCGTTTGATTACGCTGCAGCCGAAGATGCTTGGGGTGTTCTCCAACCGTCGATACCGAGACCAAGGGAACGATCTTGCAATCCAAAGTGAATGAAAACCGCGAAGTCGATCTCTAACGCTGCAGGTCAAGAAGT # Right flank : CACAAACGTCCGTGGCCCGACGGGGTCGCGGTCGACCCGCGCACCTGCTTTCCGCGCCAGTAGGGCAATCTCGGTCTGGCCCACGCCAAGGCAAGTGCCAGGTCCTAACGACTGCGACCACACGCCTCCGGGCGGGACCAATCCCTGGCGTGACCTGATCGCCTCGCAGTCCATCCACGGCCCAACGTGCGGCACCGGCTGAATACCGACGACCATGGTCCAAGCGTTTTTCCTCGGCGACACGGCAGACAAGTGCCGCAGACGATTGGGCTCCGGTCATCGCGACAGGCGCAAGACCCAGCTTGCGGAGGCAAACCACTAGGACTGCGAAGCGCAAGATCCCAGGGGTCTGGTCACGAGCTGCAGGTGTTGAGCATGCTCTGTAGGGCGGACTTTTCCGACGACTGCAGAGTCAGACCCCAGCTGTACTTCACGGTGATCCACATCTTGCTGTAGGCGCACCGGTACGACGACAGAGACGGCTGCCAGGTGGAGGGGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 6472-4084 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGSY01000330.1 Micromonospora arida strain LB32 NODE_9_length_82529_cov_11.1751_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================ ================== 6471 28 100.0 33 ............................ CTCCGGCTATGCGGCGCTGGTCGCCGAGATGGC 6410 28 100.0 33 ............................ CGTGGTCGCCCGGGCGAAAGCCCTCGGGCTGGC 6349 28 100.0 33 ............................ TTACCCTTGTCATTGAAAGCTTCGAAAGCGGGA 6288 28 100.0 33 ............................ CACCGTCGCGGCGACCGTCTGATCGGATCCCCC 6227 28 100.0 33 ............................ CATCGCGGAACGACTCACGGCCGGTGCCCGCAG 6166 28 100.0 33 ............................ GTACGTTCTAGGACGCGGCAGCCAGCGCAGGGC 6105 28 100.0 33 ............................ GCACACGCGCAGGTCGCCGACGTACCGGTCGCC 6044 28 100.0 33 ............................ TGCGCGAAGGCCGACGGGGGCGACTGCTACTGC 5983 28 100.0 34 ............................ GGGGGGGACCACCAGTGGACCGCGACGCCACCAT 5921 28 100.0 33 ............................ GAAGGCAACCGCTCGTGTCCGTGCCAAGCTGAA 5860 28 100.0 33 ............................ CCTCACGATGGTTACGCTCACACAGCGGCCTAG 5799 28 100.0 33 ............................ GGTGTCCAGCGCGGACCCCCGCCGCCGGTCCCT 5738 28 100.0 33 ............................ TGGAACGGCTACCCGAAGGGGGCGCGCCGCGTC 5677 28 100.0 33 ............................ CGCTGGTGCCCGTACCGCGTTCACGGCCGGTAG 5616 28 100.0 33 ............................ GTGCTGGCAGAGGCTATCGAGGTACGCGGCGGG 5555 28 100.0 33 ............................ CGCTGCGCTGGCGGACTTCCGCGCCGGGTCGCT 5494 28 100.0 33 ............................ CTCGGGGAAGTACCCACACCAGTTCGTGCTGAC 5433 28 100.0 33 ............................ CCACCCCGACGCCGACCATGACTGCGCGGACAT 5372 28 100.0 35 ............................ CTCGTTTCGGCGGAGGATCCGGGCGCCGCCGGCGT 5309 28 100.0 33 ............................ GGCGGGGGCGCTTCGCCAGGCCCGGCGACGGGC 5248 26 92.9 33 ........--.................. CTTCCTGATCAAGGTCGGGTCGAGGCCGGGCAT 5189 28 100.0 33 ............................ CACGGCAGGCCCAACGCGCCCGGTGCAGAGCCG 5128 27 96.4 31 .....................-...... CGGCTGCTCGTCACGCTCCATGCCGGCCCCC 5070 28 100.0 33 ............................ ACTCCGTGTCTTCTGCAACCAACGCAGAAAAGT 5009 28 96.4 33 ........G................... GCGAGCGCACGCTAACCGGGTCCACCACGCGGT 4948 28 100.0 33 ............................ GATGAACCGGGCGAACTCCTGCGCCTTCGGCGA 4887 28 100.0 33 ............................ AAAACCCCGCACACAGGGCGCCGGGGAGACTTT 4826 28 100.0 33 ............................ GCTGCTCATCAACCGGGAGTTGGGCCGGATCCG 4765 28 100.0 33 ............................ CGCGACCACCTCGCCGGGCCCTGCCCGGTCGTC 4704 28 96.4 33 ..A......................... CTGCTCCAGCTCCTGGCCCACCTCCATCCGGAC 4643 28 100.0 33 ............................ CCCGCTCGTCCGCCGCAAGCCCTGAGGAGCCCG 4582 27 92.9 33 .............G..-........... GCCGGGCCGCCCGACGAGCAACGCCGCGTGGCT 4522 28 100.0 33 ............................ GCTGATCGGGCTTGGCGAGGAAGAGCCGCCGGA 4461 27 96.4 33 .....................-...... TACTTTCGCGCCTCAGACTCGACGTGGCAGTCC 4401 28 100.0 33 ............................ GGGGGTCGGCTTCGGGAAGGTGTACGGCGGCGG 4340 28 92.9 33 ......G..........T.......... CGGCGGACGCGTCCAGCCCGTCATCACGATCTC 4279 28 89.3 140 ...T..........T......A...... CTCGCTCCGGCGTCGTCCGGCTCGCCCCACATCTGCTCCCGAGCACGCGGGGTGTCCACGTCGGAGACGCAGTTGGCGATGCGGGCTCGCTGCTCCCGCACGGAGTGATCGTCGTCCGACTCCGCTTCTTCTCAGGTGGA 4111 27 85.7 0 ...T.....A.....A.....-...... | T [4086] ========== ====== ====== ====== ============================ ============================================================================================================================================ ================== 38 28 98.4 36 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCGAAACAGTGAGCGTGCCGTCGCTCACTCCGCCGCAGCGCGAACCCGACCACTCGCTACGGTGGCAGACCTCGTAGCGGTCTGCTCGGCTTGCCGGGTAGATGACCGCCTGGACGACTCCTCCACGACGATCATCGAAACGGCGACCGCGCCTGTCCGACCTGAGCCTGGAGCGCCTCCACCGACGGCTCCGTAACCGCCGCCTACGCAGAACCTCAACGTGCTGGCGTGGAGCGATTCCATCCCTCACCTCGCGTTTCTGGGCCCACTGACTTCGCCTAGTCGGTCGCGAGCGCGTGACCTCACCTCTGCTCAGCCGGTAAGTGGCAGTGTTCGCTGGTCATTCCACTGAGCCTCACCAACTACGCTGTAGCCGAACTCGCTTTGCCCTCCACATGCCTCCTTACACCGACCGGAACCGAGACCGAGTGCGATGATCTTGCGGAACCTAGTGAACAAAAACCGCGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : GCGCGCCGGCCGACGCATTGGACTGGACAAACTCGAAGCGTGGGCTTACAAACCGTCATTTCCATCGCCCGCCACCACGTGCGGAGGCCGTAGCAACGAAGAACCCGGCTCGTGGCCATGCTGGCACTGATATACGGCTGAACGGCTTCCAACGACCGTCGATCGGATCATGACCGCCGACCCCAGCAGTTCCTAGAGTGGTGAAGTGTTAACCCTCGGCGTTGACCTCGCAGCCGCAGACAAACGTACGGCGATGGCCGTGATCGAGTGGCTACCAGGCCGGGCAGTGGTACGGGAGGTAGTCCTTGACGTCAGTGACGCTCGGATCGTCGAAGCGAGTCGGCGCGGGGACAAAATCGGGTTGGACTGTCCGCTCGGTTGGCCAGAGCCATTCGTCGCACTCGTTACGGCCCATCAGGCCAGTCATGTAACCGTCGATGACGGTGGCGGCGCGCCGTGGCGGCGTCGCTTGGCCTATCGCCAGACTGACGAGGTGGTAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //