Array 1 23-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCMG010000560.1 Vibrio parahaemolyticus strain Vb2207 FNIIJGHA_1228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 36 .............................. TCGGATTCCTCGTCATCGCTGGTACGCTCCCATTGT 89 30 100.0 36 .............................. CGGAATGATTCTTGCCCCTGGCTGGTCCCATGATCC 155 30 100.0 36 .............................. TTTTATTGTGAAGGAGGAGGGCAAACCCTCCTCCTT 221 30 100.0 37 .............................. TGGTTGGCGGCCAAGTTTGCATGGAAGTTGGCAACTA 288 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTTGTAGCTTACCTATGAGGGATTGAAAC # Left flank : TTTGCATGGAAGTTGGCAACTAG # Right flank : TCGTTCATAAGCGAGCCAGCCAAGCGAAGAAACCCAGTTTGTAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23-648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCMG010001156.1 Vibrio parahaemolyticus strain Vb2207 FNIIJGHA_213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23 30 96.7 36 ....................A......... AAGCCACAGCGTGTAAGGAGATGATAATGTAATGGG 89 30 100.0 36 .............................. TCAATGGTTTCAGGCGTTTTTATCGTTTTTCTTCAT 155 30 100.0 36 .............................. TTTGATAAATACAGGAAGATGTTAAAAGGTGTCAAC 221 30 100.0 37 .............................. AATAATTGCTTAAAAGTCAAACACTATTTATAGTTTT 288 30 100.0 37 .............................. AAAACTCAACCAGACCAGACCAGTTTAGTGACGAGGG 355 30 100.0 36 .............................. TATCTCACTTGGAGATATTCCCCAAATGAAGATATA 421 30 100.0 36 .............................. TGAGAATACAGACAGTCTTAATATTCTAATTATTCA 487 30 100.0 36 .............................. AACCCTGATTTTTCATAGTCTGATACATAATATCTA 553 30 100.0 36 .............................. CATTAAAATCTGCAATTTGTGCATCATCAAGGATAT 619 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AACAGCCTCCACTAATACATTTG # Right flank : AAATAATGCAGCACGATGCAATATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 43-271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCMG010001088.1 Vibrio parahaemolyticus strain Vb2207 FNIIJGHA_358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 43 30 100.0 36 .............................. ATATCTAATTTTTCTTTTGTATATGGAATTTTATAA 109 30 100.0 36 .............................. TTGTTTATTGCTTCATCTAAATCATCAGGCTCAATA 175 30 100.0 36 .............................. ATAATGATAGTTAAGTTCGTCTCCATTTTTCACCTC 241 30 76.7 0 ...............GTG.CA...A....G | G [254] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 36 CTTCAAATAGAACTATACTAGAATGTAAAT # Left flank : GTAAATATGATGGACTAGCTGGGGACGTTTACAGTGGAGTAGC # Right flank : ATATATTTAGACACCCAATCTTTGATATTTAAACATTTTATATCAATTTGGCTGTCTCCCCCCTTTTTTGATATGTTTTAATAAGAAACACCACACACAAATCTATAAAAAAAGGAGAGACAAACCAAAATGATAGCTTTAATTAATAATTTGTTAAACATTAATAAAATTTTATTTTCTTTACTTGAATCTTTTTTGATTCTATTTATTAAAAATCCTATTGTCCCTAAAAGTCATAAACCTGTTAATAAACCTTATAGGAAGATTGAAGTTGAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAATAGAACTATACTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //