Array 1 99555-99722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPF010000001.1 Streptococcus oralis strain KK42 Soralis_KK42_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99555 36 100.0 30 .................................... TGAAACCCTCTTATCTTTGGATGTGACGGA 99621 36 100.0 30 .................................... CGTTTGCAACATCCAAAATATCTCTAGAAC 99687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGCACAAAAATCAAAATTGACGAATTTGA # Right flank : CTGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTCCAGAGCGGTTTTCGTCTATTCTTGCCTTTTGCTACAATACCCACGTACGGATAGCATGGGCAACGCCAGATTCATCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACGGGGTTGCCAACGACTTCCAGCATGGCGCGGTCATTTTCTTCGTCCCCAATCGCCATGGTTTCATCTTTGGTCAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCTGATTTGTTGATAGAGTAGCGCTCGTAAAATTCGGCTGGAATCTTTTTAATCGCAGCATCGAGGATTTCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGTCAGCCATTTCTTCGGGAGTACGGTAAAAGATAGGCATGTTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 259095-260101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPF010000001.1 Streptococcus oralis strain KK42 Soralis_KK42_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 259095 29 100.0 40 ............................. TATATACAGTCGGCTTTTCTTCTATAATCTCTGCTGTTGC 259164 29 96.6 43 ...C......................... GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAA 259236 29 96.6 42 ...C......................... TTACTGTAATTCAGCAAGATCAGCAAGATTAATCAATAAACT 259307 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTCGGTGACAATCCTGCTTCTT 259385 29 96.6 46 ..........G.................. TCACCATCGACCTTATAGTCGATGACCTGAAAATCTTCTTTTGGAA 259460 29 100.0 48 ............................. AATTGACCGCTATGACCTTCAAATTCAGCAATACAACGTTGTACGAGT 259537 29 93.1 47 .C.C......................... ACTATTAACCCCGTAAAAGATCCCTACTTTCAAGAAACAGCAGAAGC 259613 29 96.6 39 ...C......................... ATCTTCAAGACTATTTCGTCATCTTTTTTAATGAACTGT 259681 29 100.0 44 ............................. TCTATGGTTTCTCCTTTTAGACTTTTTAGGATATATACTACTAC 259754 29 100.0 53 ............................. ATAGCACCTAAGAAAAAGTGAATATCCTGACTTAACTTTATTATTGCTATCCC 259836 29 100.0 52 ............................. GAGTTGAAGGGTGCTCCATCGTGGCTCTGATGCTGGATTAGAGCGGACATCT 259917 29 100.0 54 ............................. TTGCATTGTTGACAACCCGGCTGACCGTAAATTACTATAGCCATTTTAAGTTAT 260000 29 86.2 44 ACCT......................... CTCTTTGCCTTGGTTCATTTTATTTGCAATGCGATGAGCTTTTT 260073 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ====================================================== ================== 14 29 96.3 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCGGTTATCGTGGATCGAGTGATGTTGAGTTTGATCAATAAACATCAAATCAATGCTACAGATCATTTTGAAGAAAGGGAAGATGGCTCGGTTTATCTGAATCGTGAAGGGAAGTACATCGTCTTGCGAAGTTTTGAGGAAAAACTACAGACGAGGCTAGTCATAGGAGGATCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGTCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTGAAACGCTTTAAACCTTACAAATATTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTATCAACCAAGCTGTTTATAGGTGCTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTACCCTTTGCGGCCAAGGAACTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGCGAGCGGTTAAAGTACGCTTATCGGCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAATGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAAT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 261780-262469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPF010000001.1 Streptococcus oralis strain KK42 Soralis_KK42_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 261780 29 100.0 43 ............................. TTACGTTCAGCAGTTTCACGAGTTTCCCACTTACCTAGTTCAG 261852 29 93.1 44 ..A.................C........ GTTTCAAACTTAGGAATGTTGTTTACTACCGTTATAGTTACTTC 261925 29 96.6 37 ....................C........ TTTTTATTCATGAAAGGTTCCTCCTTTTGGATTTGAT 261991 29 96.6 43 ..A.......................... GAAGCCTACTACTTTTTTTAGGCTTCTCCTTTGGTGCATTCTT 262063 29 96.6 54 .......T..................... TCACTACGATAAGTAAGACCATGTTCATCAATATCCAACATTACCCATCTTTTC 262146 29 100.0 48 ............................. TTTTTACATTGACCGAATGTTACGTCTTTACTATCTTCCACTGAACGA 262223 29 93.1 44 ...C.C....................... TTTTGAGCTCTTTGATGAATGTTTCTAAAACCCAGTCTTCGAGT 262296 29 96.6 49 ...C......................... GCTTCTTAAGGAATTTTTTGAATAATCTTGCGAGATGTTTTTCTTCAGC 262374 29 93.1 38 ...C.C....................... TTTCCTCCTTAAAGTACCTCAGTTGCCCAAGGTCTGAT 262441 29 79.3 0 ..A.......G..............GTTG | ========== ====== ====== ====== ============================= ====================================================== ================== 10 29 94.5 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTGAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCAGAATTATGCCCGCAGGAGCAAGCAGTGGAAATCTACGAATTGCTGCAAACCTCTCTCTATATAGAGAAGCATATCAATCTCCTAGATAGCCAAATCAGTGAACTGCATGATATCAGCCAGACGGAAGCAAGCAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTCATCTATTTCAAAAAGCGAGAATAAATGTATATTATCTTGACATACGATCTTCATCACAAGCGCGTGCCTAAGGTTTCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTCTGTCTTTGTTTATCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGTATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAATTCTCTTAGTAGGAGAGTTTTTCTGTGTTTCAACTACGATAGTATAGAGTTTAAGTTAGATGGCTGATCAGTTTTTTGTTATTTCATGATAGTGTTACGAATATTTATTGGTCTATTGAGTTAAATTAAAAACATTATTTTCTATTTCATTTATCGAAAAGACCTACTATCCAGTAGCCCCCCTACTGTACTAGTCCTTTTTCAGTTTATCTATGGTATAATAGAGGATAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGCACATTTCTAGATGGAGAGGGTCGGTTTGATATGGAACGCCTTAAAAACTTACTTGTTTCCTACAAGGAAAAGGGGATTTATTTTGCAGTGGCTTCAGGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTCCCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //