Array 1 40874-46454 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOJD01000003.1 Austwickia chelonae strain DSM 44178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40874 28 100.0 33 ............................ CGACCCGGACAAGAGCGCCCTTACGGCGTACGG 40935 28 100.0 34 ............................ AGCGGGCCGGGTGCTCTACCTGGCCGTTGAGGAC 40997 28 100.0 33 ............................ GAGCGAGGTGCGGCCGGTGCCGGTGCGGTCCGG 41058 28 100.0 33 ............................ AGCGAATGGGTCCCGTTGGCGCGGGACCCATTC 41119 28 100.0 33 ............................ CAACGGGACTGAAAACGGAGAGCAAGCATAGCG 41180 28 100.0 33 ............................ GCGGTGGCGGACCTCCTCGCCTGAGCGGCGGCG 41241 28 100.0 33 ............................ ACAGGAGCCTTCTCCTGCCAGTCACTACGGTGC 41302 28 100.0 33 ............................ CAGCTGACCGGAGCACTCGAACCCGATGTTCTT 41363 28 100.0 33 ............................ GACAAACCTGTCCTACTGACCGAGGAGACGAAC 41424 28 100.0 33 ............................ GCCACCGCAGTCGGCGGCCTCCGGAGACGGCAT 41485 28 100.0 33 ............................ CTGCGTCATTGCCGAGGCCGCGTACTCCGCGGC 41546 28 100.0 33 ............................ CCCACTAGCCCAGGAGCCTCGAGATGCACGCCG 41607 28 100.0 33 ............................ CTCCTCCGCAAAAGCGACCCCGAGGTGACCAGC 41668 28 100.0 33 ............................ CCGCCATCAGCGCGCCACCGGCCAGCAGCGCAA 41729 28 100.0 33 ............................ TGAGCCGTTCGCATCATATGCTGAGATGCCGAG 41790 28 100.0 33 ............................ TCGCGCGGCGACGTCCCACGGGTCCTGCCCAGG 41851 28 100.0 32 ............................ TCCTCACGCAGACCCCGCGCGTACCACAGTGC 41911 28 100.0 33 ............................ CTGGTTGAAGGCCAACCCGGCCTGCCCGATCCG 41972 28 100.0 33 ............................ CGAAGACTACCCGCCTCAGCTGGTGGACGGTCG 42033 28 100.0 33 ............................ GACCATGAAGCCGGTCAAGCTCGCCGGTATCCT 42094 28 100.0 33 ............................ CAATCCGGCGTACTCGCCGTCAGTGGAGATCAG 42155 28 100.0 33 ............................ CACCATCCGTGTCCCGTCGGTCATGACCGCCTC 42216 28 100.0 33 ............................ CCAGCTCATCGACGCGGGCGTGCCCGTGTGGGA 42277 28 100.0 33 ............................ GGTCAAGTTGCTGCCGTTCGAGGGTGTCATTTG 42338 28 100.0 33 ............................ CGGGACTTCCCATCGTCATCGTCGAGGCCGGCG 42399 28 100.0 33 ............................ CACTGGCACGCTGACGATCTCGAACCTCGTGGT 42460 28 100.0 33 ............................ CGATCCCCAGACGCCCCACCCCCATACGCCTCG 42521 28 100.0 33 ............................ CGACCCTGTCCACATCAGCATCCTCCTGGCTTG 42582 28 100.0 33 ............................ GAGCCCGCTGCTGGCGGCGATCGCGATTTTCGA 42643 28 100.0 33 ............................ GGCGGTGTGACGTGCCATGGAAACCGTCGGCCC 42704 28 100.0 33 ............................ CCCGCTTCCATCGGAGGTCTCTTCGTCGCCGAA 42765 28 100.0 33 ............................ CTCCTCACAGTCGGCACTGGCGAAGTCAAGGGG 42826 28 100.0 33 ............................ GGCGTCGACCCGCTCGGCCATGGCAGCCATGCG 42887 28 100.0 33 ............................ GTATGTGACCAACGTCACTACAAGCGCATCAGG 42948 28 100.0 33 ............................ GACGTGGACGATGTCCGCAACAGCATTCTCGGC 43009 28 100.0 33 ............................ CTCGATTCCGCCGACGTTGATGCTGCCTGGGCC 43070 28 100.0 33 ............................ CTCGAGCTTGTACATGGTCGGCTCCGGTGATAG 43131 28 100.0 33 ............................ CGCCAACAGGACGACGGGGCCTGACCGCCCAAA 43192 28 100.0 33 ............................ GAGGCCGCCCGCCTTCCGCATGGGCTCGAGGAC 43253 28 100.0 33 ............................ GGTCCGCGGGTGGGATCGTATGGCGCTCACCGT 43314 28 100.0 33 ............................ GTCACACTGTCTTTCGAGGATCGCCGGTTGGAC 43375 28 100.0 33 ............................ GAACGGCATGGACCTCACCGAGCGCAAGGCAGA 43436 28 100.0 33 ............................ GGCTCCGGCAGAAGACACCACTCGGGCTATGCC 43497 28 100.0 33 ............................ CCGAGCAGGCATGGACGGGATAGCCACGCCCTC 43558 28 100.0 33 ............................ GGTTCGACATCTTGGCGCCGCTCGGTCGGGTGC 43619 28 100.0 33 ............................ GTTCTACTCGACGCTGCTGAAGGTCAAGGGCTG 43680 28 100.0 33 ............................ CGGGCGTGCGTTTCGTCACAAGATCAGCGCGCA 43741 28 100.0 34 ............................ GACAACCGTTCAGCTCGGCCTCGTCGACCTGATC 43803 28 100.0 33 ............................ CTCCCCGCGAAAACCGGGCCGGTGACGGGCGGG 43864 28 100.0 33 ............................ GCGTCCCGGACGCCGACTATATAGACGACACGA 43925 28 100.0 33 ............................ GGTCGAGGCCCCGGGGCCCTGGATGGTATTGCT 43986 28 100.0 33 ............................ CGACCCGGACAAGAGCGCCCTTACGGCGTACGG 44047 28 100.0 33 ............................ GAATAACATCGTTAACAAGTGGAATGAGATCAA 44108 28 100.0 33 ............................ CCACCGCTTCACCCACTCGTGTCCGACTCCGCC 44169 28 100.0 33 ............................ GGCGTCGGGTTTGTTCGATGAGGCGGAGGTCGT 44230 28 100.0 33 ............................ GCCGCGGATCTGCGACGCATATCTCGAGCAGCG 44291 28 100.0 33 ............................ CTGGCGCACGCCGCGTCCCCGAGGGCCCGTCGG 44352 28 100.0 33 ............................ TAAGACTCCAGCCGGGCACACCTCCGCGTTTAC 44413 28 100.0 33 ............................ CCCCACCGTGACCGTCGCCGTCGCCATGTCAGC 44474 28 100.0 33 ............................ TAAGACTCCAGCCGGGCACACCTCCGCGTTTAC 44535 28 100.0 33 ............................ CCCCACCGTGACCGTCGCCGTCGCCATGTCAGC 44596 28 100.0 33 ............................ CGGCCCGGCCCTCGGTCAGGTACATCTCCGAGG 44657 28 100.0 33 ............................ CGCCATCACGACTTCGGGCGGGATATCGGTGGT 44718 28 100.0 33 ............................ CCACCCACCGGCCCAGAACGCTGCACCCACTGC 44779 28 100.0 33 ............................ GTCGTCGGTGTAGTCGGTGAGATCCCACTCCTC 44840 28 100.0 33 ............................ GCGCACACAAACCCCCGACCCCGCGGCCGCTTT 44901 28 100.0 33 ............................ CAGTATTCTCGGCGTCCGGCCAGCTGACGGCGC 44962 28 100.0 33 ............................ CGATCCCCCGACGCCCCACCCCCATACGCCTCG 45023 28 100.0 33 ............................ CGACCGGCCACCGGCGACCGCGGTACCGCGGGG 45084 28 100.0 33 ............................ CGATCCCCCGACGCCCCACCCCCATACGCCTCG 45145 28 100.0 33 ............................ CGACCGGCCACCGGCGACCGCGGTACCGCGGGG 45206 28 100.0 33 ............................ CGATCCCCCGACGCCCCACCCCCATACGCCTCG 45267 28 100.0 33 ............................ CGACCGGCCACCGGCGACCGCGGTACCGCGGGG 45328 28 100.0 33 ............................ GACGCGCAGGTCGTCGTACCCGAACCCGTAGGC 45389 28 100.0 33 ............................ CGGTGTCGGCGTGCCCGTCGTGTCCTACGAGCC 45450 28 100.0 33 ............................ CGACAACGTCTTCATCGCAGCAGCCGCGACACC 45511 28 100.0 33 ............................ CCCGATGTTCTTGTTGGCCAGGCAGAGGATCGC 45572 28 100.0 33 ............................ GAGGTGGCGTGCCATGACATGGATGCGTCCTGT 45633 28 100.0 33 ............................ GATGGAGCTCAACGCCCGGCGATTCGCGGAGGC 45694 28 100.0 33 ............................ GGCCCAGCGCACCGGGTCCCCTACGAACAAGCT 45755 28 100.0 33 ............................ GACACCCGACCGACCCTGTGCGTCGCTCAGAGC 45816 28 100.0 33 ............................ TGAATGGGCCCCGTTCGCAGCGGGACCCATTCG 45877 28 100.0 33 ............................ GGGCAGCCGGAGCTTGCGTCCGGTGTCGTCGGC 45938 28 100.0 33 ............................ GACGTTGGGGCTGGAGAACAAGACCAAGCTGGC 45999 28 100.0 33 ............................ GTGCCACCCGTGCCACGACATGACGCCAAGCGA 46060 28 100.0 33 ............................ GTCGAACCCGAACCCGTCAGCGTTTGACTGCTC 46121 28 100.0 34 ............................ AGTCCGGGGTGAGCGTCCATGACGCGGTCCCGGG 46183 28 100.0 33 ............................ CCAGCTCCGAGACGCCGGCGTGCCCGTCTACGA 46244 28 100.0 33 ............................ CCGCTGCTTCAGCTCGTCGACGTTCGCGCCCGA 46305 28 100.0 33 ............................ GCATGTCGACGATATGTGCCCGGGACGTGTCGG 46366 28 100.0 33 ............................ GACGGTGACTGCGGAACCGAAGACCGTCACGGC 46427 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 92 28 100.0 33 ATGCGCCCCGCACCTGCGGGGATGAGCC # Left flank : GGAGCTTGACGTCGTCGAATGGGACAGCTTGGAGTTGTGGGACGGCGGGATACGTACGGTTCCAGGAGGGGTGTCTTATGGGGATGAACGGGGTGGGTGATGGTAGTCATCGTGTTGACGGCGTGCCCGGTCGGTCTTCGTGGGTACTTGACCAGGTGGTTGCTGGAGGTCAGCGCGGGTGTATTTGTCGGGAAGGTCAATGCGCGGGTTCGGGAGGAGCTGTGGGATCGGGTTTTGGAGATGGTCAAGGATGGCCGGGCCATCATGGTTTTCGGTACGAATTCGGAGCAGGGGTTGGATTTTCGGGTGTATCGCCACGACTGGGAGGTCGTCGATCTCGACGGTGTGCGGGTGATGCTTCGACCGGCTGCGCCGTCGGAAGAGGTGTCGCGTTCAGGGTTGAGGCCAGGGTGGAGCAAGGCGTCGCACCGGCGGCGCGCTGCAAAGCGAAGTTGAAGAGAATCTTTGTTACCGGGTGGTAATATCCCTGGTCAGAAAGT # Right flank : CAACCCATAACCTTCTGCTCTGTGGACTCGCGGAATATTCGCAGCCGGTCACTCCTTCTACGTGACCAGCACATCTGGCCCTTTCCCGTGTAGCGTCAATCGCGCCTAGACGGTATGCCCTCTCGCCATCGGTGCTGTGTGAGCGAACGTGCACGCGCACGTGGATCTCAGGAGCAGTCTCATGGCGAAGAAGGGGAAGCCGCCGATCGGCTCCGCGCAGAGCGAAGCTGCGAGGCATCGCCAAGTACGAGCATTGACGCATTCCTGCTGGATACAGCCAGTTGACACGGCGAGATCAGCTGAGACCGACCATCCGCGCGTTGATCCACATCGCAGCGGTTCGCGCGCCGTCCTGATCCTCGGCAAGCGACCTCACGAAGTAGTCGACCTCCGCCGCCGACGTCCACACGAGGCTTTGACCATTCAGCTCCAGGAACAGAACCGTCGTGTGCCAGGCCAACCGCTTTTGCCGTCGGTGTACGCCTGAGCGCGCTGGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 129645-130651 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOJD01000001.1 Austwickia chelonae strain DSM 44178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 129645 28 100.0 33 ............................ ATCGGGCCCCGGTGGAGTCCGACCGTGGCTCGA 129706 28 100.0 33 ............................ TCCAGGGCAGCAGTCGCGGCGGCCGCGTCATCG 129767 28 100.0 33 ............................ CCCTGGTACGCCCTGCTCATCCCGAATCCCCGA 129828 28 100.0 33 ............................ GTCTTCGGCGACGACTTCAGGCGGTACGGCGCC 129889 28 100.0 33 ............................ GGGCGACCCGGGCAGCGGCGGCGGCGGGTCTAC 129950 28 100.0 33 ............................ CCTGAAGCGCGCCTCCTGGATTGAGTGGTCGGC 130011 28 100.0 33 ............................ TTGGCCCCGTCATCCAAAGCGATGCTCGACCTG 130072 28 100.0 33 ............................ CCCGACGACGCTCCCTAACGGCGGTCACGGGTT 130133 28 100.0 33 ............................ AGATCAAGATAATTCGCGCTCGCTTCGCTTGTC 130194 28 100.0 33 ............................ CCCCCAAGCCGGTGCCGGTCACCTGACCGCGAG 130255 28 100.0 32 ............................ ACCGAGATCGACGCGGTCCTCGAGGCGCAGGC 130315 28 100.0 33 ............................ TGCCATCGCGACGATGGCACTGACCACGGCCAC 130376 28 100.0 33 ............................ GGTCATCCCGATCGATAAAATCGCCTAGGAGCC 130437 28 100.0 33 ............................ CCTCTGCTTACAACGACCCGAACGACCTTCGGG 130498 28 100.0 33 ............................ GAACGCCAACTCAGGGTGGGCGCAGGATCCGGT 130559 28 100.0 33 ............................ GTCGAATCCGAGTTCGCAGCTCGGACCCAGGTC 130620 28 92.9 0 .......................T.T.. | ACG,C [130633,130648] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 33 GTCCTCCCCGCATACGCGGGGGTCGAGG # Left flank : ATCGCCTCCGAGCCTGGCCCGGACGGCACCGATCCCTCTGCCGTGGTCGCTTCGAGGGTGTCCTTGATCCGCTGCGCCGTCGTGTACGTGTGGTCGACCACGGCTCGCCGGTCGACCACCACCACGTACCGCATCGGCACCTTCCGGACTGTGCCCGGCTCCCGCGTCACCCGTTCGAGATCTACCGCCAATGCCCACAGCCACGCCACCATCAGCGACGTCTTGCCGTACCCGGTGGGCACCACCACCTGCTCTAACGGCTCCCCAGCTACCAACTCGGCAGCCGCAGCCTCCTGCCACACATAGGGAACGTGCCCTGTCACCGCCTTGAAGAACACTGCGAACGAGGGCAAACCGCCAGGCACATCATCCGACCTTGTTGTCACGACCCCGACCGTAATCGCGCCCACCGACAACACAATGCGCGCCCGAGACAACGCCCCCTGGTAAGCTCATGCTGAAACACTTCACCGTCGCTGTATCACTGCAGGTCGGGAAGA # Right flank : GTGATGCACCAGCATCGACCACGAGAACCCGCTGCGGGGAAGGCATTACAGCATCTCGCTCTTCGGGTGCGACCGCGCTCCAGGGGACCTGACGGTCTGCAATTTCCTGGGACAGGGCCGCTCGGGCACACCGGCGATCCTGTCCCAGGAGCGAAGCCGCCACCGACCACACTCCCGACCTGGTGGCTTCCGATGAACCGTCCCAGCCGGTGCACGTCACCTGCCGTTGCCGGCGTCCCGCAGCTGAACAAGCAGCCGAGGCCAGTTCGTCGCTCATCGCCAGCATCGTCACCGTGACCGCAGCGCCCATCAGCGCCTGGGCTGCCCGAAGCACCATCGCAACAAAGAAAACCAACGAACTAGAGAGGAAGCGATCTGTGACAGCCCGCCGTTCACCAACAGCAGACAAGCCGCGCCAGGGGCCGTGAATTCCTCGTTCTGCCCTTGTCCTTGCCCGCAGGTAGGGCGGAGGATGCAAAGGAAGGAGCTGAACGTCATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCATACGCGGGGGTCGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //