Array 1 109041-106266 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAB01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 17819-1 NODE_1_length_219120_cov_6.41899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109040 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 108979 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 108918 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 108857 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 108796 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 108735 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 108674 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 108613 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 108552 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 108491 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 108430 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 108369 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 108308 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 108247 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 108186 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 108125 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 108064 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 108003 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 107942 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 107881 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 107820 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 107759 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 107698 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 107637 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 107576 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 107515 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 107454 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 107393 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 107332 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 107271 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 107210 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 107149 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 107088 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 107027 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 106966 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 106905 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 106844 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 106783 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 106722 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 106661 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 106600 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 106539 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 106478 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 106417 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106356 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106295 29 93.1 0 A...........T................ | A [106268] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127530-125548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAB01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 17819-1 NODE_1_length_219120_cov_6.41899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127529 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 127468 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 127407 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 127346 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 127285 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 127224 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 127163 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 127102 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 127041 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 126980 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 126919 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 126858 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 126797 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 126736 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 126675 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126614 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 126553 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126492 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 126431 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 126370 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 126308 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 126247 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 126186 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 126125 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 126064 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 126002 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 125941 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 125880 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 125819 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 125758 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 125697 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 125636 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 125575 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //