Array 1 2105687-2104001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016672.1 Neisseria meningitidis strain M22828 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2105686 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 2105620 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 2105554 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 2105488 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 2105422 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 2105356 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 2105290 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 2105224 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 2105158 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 2105092 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 2105026 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 2104960 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 2104894 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 2104828 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 2104762 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 2104696 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 2104630 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 2104564 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 2104498 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 2104432 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 2104366 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 2104300 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 2104234 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 2104168 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 2104102 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 2104036 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //