Array 1 92-1326 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000013.1 Paenibacillus sp. YN15 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 92 33 100.0 33 ................................. AAATCCCACAGAGATCAACACTTCTTGGTCCGC 158 33 100.0 34 ................................. AGCCCTGCGTTATTTGCGGAGAATCCACTAACGT 225 33 100.0 33 ................................. CAAACCAAGGAGGCGAAAACAGAAATGAGCAAC 291 33 100.0 35 ................................. ACATTCAAATTTTGTTCATAATCAGGTTTCCTAAA 359 33 100.0 33 ................................. TAAGCTGGCTTGCGGACTCTGGCGAAGGAAGTC 425 33 100.0 34 ................................. TGTGCCGCTGCCGCAAAAAGGGATGATAATTTGG 492 33 100.0 34 ................................. AATTGATTGAGGTGGAAAAAGCCATTTCCGCCAT 559 33 100.0 34 ................................. ATCCTCCGTGAGGGGGCGGAGGGGGAAGCGGAAT 626 33 100.0 34 ................................. CTGTTGAGGAACGCTTCGTGAAGGCTAAATGATG 693 33 100.0 35 ................................. GACGCGTACGCCGGATCAGTAGCGTATCCGCACGC 761 33 100.0 33 ................................. CCGTTTAAGCGGACTAGCGGCAGCGCCGTGCTG 827 33 97.0 33 .C............................... CTACGGGGTACAGGATTGGAATAAAACCAGCAA 893 33 97.0 33 .C............................... AGTCATCGAACTTGCCTATTGGGACAATGACTC 959 33 97.0 35 .C............................... ACACAATCGTGGGTTTGGATGTATGGAAATTAAAA 1027 33 97.0 34 .C............................... CCGTGTACCATCTTTATCCTCCTTTACGGATTAT 1094 33 97.0 33 .C............................... ACCGGCCGCCGGTCCGGGCAATACCGGCACATA 1160 33 100.0 33 ................................. CGCGTAGATTATCACCGGGATAGCCCACCCCGC 1226 33 97.0 35 .....................A........... CTCCTCCGTGATATCCGTGAAGTTAGCAATATCCG 1294 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 19 33 99.1 34 GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Left flank : AGAATAGTACACTCAGTATCTCATGGTGTTCTACTCTTTTGAAGGTGGTCTCAGTTTGACGCTTACGGAGATATTCGCCACCTGGCCGAAAG # Right flank : TTAGCCCCAATGTGCCGCGGCACTGTGAGTATATCTTAGAGGATTGCATTTCAGATAGAACGCAGGGGGTTGGTTATACCTGGGTACTCTCATGTTATACTCTGTCATGCTGGAGAAGGAATAGAGGGAAGGGGATACGGTTATGAGCAGTTGTGACTGCCAGCAGCAGTTACCGTATGATTTTGCCTCTTATGTCAGTTGTAATGTGAAAATGGCGGACTATTTATGAAACCATTCTTGGATAAATATACACTGACGAAACAACAGAATTTGTTTCTGGCCAAAAGAAATGGGATGAAAATATATACTGCGGAATGAAAATGGAGAATCGCAATATCACGTTTCCGCAAACACAAACGATTTTAAACGGAGTTAACGTACCTGGTGTTACATTGGATGACCTTCAGGCTGTTCTCAATATGCGAGACGCTTGGCGTTATCTCATGAATGTTCACAGATGATGTGCTTCCAATTCCGGTACCAAGCGAAGTTGAGCAAGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : GCCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 12076-15251 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000013.1 Paenibacillus sp. YN15 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12076 33 100.0 33 ................................. CAAGATATCTGGTTCCACGCCGGGTTAAATATC 12142 33 100.0 33 ................................. CAAGATGAAAAATTGATCAATAAAGCTCAATTT 12208 33 100.0 33 ................................. GTCTCCCGGCTCCGTAGGCTCGAAGTCCGGTGT 12274 33 100.0 34 ................................. AGCAAGCGCCGCCGCTCTTGGTATAACCGTGTTA 12341 33 100.0 34 ................................. TAAACTGTTGGGAAACATACATGACAACCCTGAA 12408 33 100.0 35 ................................. CAAACAAGTAGGGATATATTCAGCAGCCCCATCTG 12476 33 100.0 33 ................................. CGACAATGAGCTGCATAATATGGCGCTATCCTC 12542 33 100.0 33 ................................. ACGCCGTTAACCTCCTCATGCAAAGTATTTTTG 12608 33 100.0 34 ................................. AAATACTCGTACCCCTGCTTGTGGTAATTGGGTG 12675 33 100.0 34 ................................. GTGGTCATCGCTGCTCCATACCCTCGGACCCGGT 12742 33 100.0 34 ................................. AGATACACTCCAAAGTTCATCCAGCTCCACTTGG 12809 33 100.0 34 ................................. TTGGACAGGTCTTCATGCTCCTGCTCCGTCAGCG 12876 33 100.0 35 ................................. CGCAGCGAAGAAAGCCGTTTCTAGGGTGTTTTGTT 12944 33 100.0 34 ................................. ACCTCCTTGCTTTGGAAGGATTATCCTCCTGTGT 13011 33 100.0 34 ................................. ACCTCCTTGCTTTGGAAGGATTATCCTCCTGTGT 13078 33 100.0 34 ................................. TGCTTGAATCCTCTTCCCGCAAAGATACGCCGGA 13145 33 100.0 33 ................................. AAATTGCCGAAGGGGAACAAACTCCATGCGGTG 13211 33 100.0 34 ................................. ATCCGCGTCGCCTTTGGCGTTGTATAAGCCATTG 13278 33 100.0 33 ................................. CCGGTCCATGCTGATGGGGCTGTCCCAAGATAT 13344 33 100.0 34 ................................. ATTTTCACTGGCTACCGACTGGTACACCAGCTCG 13411 33 100.0 34 ................................. ACTGTTGTTTTTGGTGGTTCAATCACATCAACGA 13478 33 100.0 35 ................................. CGTTCCGGTATCCGCCCCTGTGGGGTTGCTGGTGT 13546 33 100.0 33 ................................. AAGAATCGGACGAAAGCAGGCATTTGATGTTGA 13612 33 100.0 35 ................................. ATCATAGAAAATGGTCGATATACGGTAAATAAAGA 13680 33 100.0 33 ................................. AAACGAAAGGAGCAAACAGTCATGAAAGACCAA 13746 33 100.0 33 ................................. AGCTTGGCCGACGGGTCCCGGGGCAGCAACTCC 13812 33 100.0 33 ................................. GATGTGAAGAAGGTCATTGTCGGCAAAGCGGTG 13878 33 100.0 34 ................................. TCCAAAGGAGGCCGCTATGGACTATCGTAAAGCC 13945 33 100.0 34 ................................. CCGCAGCGGTGCCGGTATTTTTGCTTGCCGCTGT 14012 33 100.0 36 ................................. AGCCTGTACGAGGAGTATCTGTTCTTGTTCATGGAG 14081 33 100.0 36 ................................. AGCCTGTACGAGGAGTATCTGTTCTTGTTCATGGAG 14150 33 100.0 34 ................................. CCCTGTTTACCATCACAAAAGGAACCGGGATGCA 14217 33 100.0 33 ................................. CAACTGCGTACGAACCTGAGCCACATATATACC 14283 33 100.0 34 ................................. ATTAAACGGAAGATTACCGCGGCCGACCGGATGG 14350 33 100.0 34 ................................. ATTAAACGGAAGATTACCGCGGCCGACCGGATGG 14417 33 100.0 35 ................................. TTTACGAAGTTTGAGGCAGCGCATATGGCGCTCAC 14485 33 100.0 34 ................................. TGATTATTCGCAAGGTCTATGCGTGGGTGCGAAA 14552 33 97.0 34 ...T............................. CAGTAGATGTGATGGAGGTGTCAGCCCCCCCAAA 14619 33 100.0 33 ................................. CCCGTCCGGGGTTACGCGTGTTCCGGACGGAAT 14685 33 100.0 35 ................................. TTGTATTCCAGTAAATCGGACAAATCACACTCCAA 14753 33 100.0 33 ................................. TCCCTGCAGGCATCCAAAACCCTCCTTATCGTA 14819 33 100.0 33 ................................. ACAGGGTTTGCGCCGTTCTCCGCAGACTCCGGA 14885 33 100.0 33 ................................. CAGGATGCCGGGTTCATCTACCACAGCGAAGTG 14951 33 100.0 35 ................................. CCAGATAACCGTAAGCGAGATACGCACAACGGCTT 15019 33 100.0 32 ................................. AATTGAGTCATAAGATTCTTTCGTCCTTTCTG 15084 33 97.0 34 ........................A........ GCGGCACAATATCACGCTGGACCCGCGGGTGTAC 15151 33 100.0 35 ................................. TCCTTGTCGTATACGGCTTCTACCACGCTGCGGAT 15219 33 75.8 0 ..T..A..T.ATAT....T.............. | ========== ====== ====== ====== ================================= ==================================== ================== 48 33 99.4 34 GTCGCTCTCCGCGAGGAGGGCGTGGATTGAAAT # Left flank : ACCACCACAAGCGAAGGCCGCAGAAGGCTCAGCCAGGTGGCGCGCAAATGCCAGGATTATGGGCAACGGGTGCAGAACTCCGTGTTTGAATGCCTGCTGGATGCGACTCAACTTCGCAAGCTGAAATTTGAACTGGAGGAGCTGATCGACAAACAAACCGATAGCCTTCGTTTTTATAACCTGGGAGACAAGTATAAATCCAGAGTCGAGCATATGGGAGCCAAAGCCTCTTTTGACATGGATGGGCCGTTGATTGTCTAGGCATAGGGTTCGGTAATATCTGGAGGCATAGGCACTCATTTGCGGACATACTTTAAGTGGTGCGAATATCAAGCTCCCATAAAAATCCCGGCTCCTTCGCACCTCAAATATTGTCGAAGTTGATCGAAAACGAGCTGTAGTATAAAATGTCAAGAGCGCAAGCCTATCAATCTCATATATGTCCATTTGAAAAAGCAACAATTGATCGCAGCCCGCGATCAATCAAGTGAATTTTCGCA # Right flank : TGACACCAAGGACAATAAGGGGATTGTTGCTGATCGTCGCACTCCGTATGGGGGGAATTATAGTGCAGTACAAGAACGAATATTGATTTAAAGGATCTAAACCTATGAGTAACGGGTGCTAACATAGTCTGGAGAATGTACTGAGGAGGGCTGCCGCAGTTTTTAGGGAAGATCCTTTTTCCTGGTTGAAATCTGGCCTCAAGAGTTCATAATGGATTTCGAAATTCAAAAGAATAGCGACCGGTGCGAATGTCAAGCTCCCATAAAAACTCCGGCTCCTTCGCACCTCAAATGTTGTCGAATTAAAACGAAAAAGATTAACTCTCAAAAATGTCAATATCTATGCTATACTTTCTTTGTATACATCATAGACATTATCACACTATCTATGTTGATTTTGGATTGATCACACCTTTTTTTGCGGTCGCACTTCGTATGGAGTGCGCGGATTGAAATCGTAATGTCGCCGTCTCCGCACGTGCATCCGTTAAGTCGCACTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCGAGGAGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 15674-17116 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000013.1 Paenibacillus sp. YN15 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 15674 33 100.0 35 ................................. CGTAATGTCGCCGTCTCCGCACGTGCATCCGTTAA 15742 33 100.0 34 ................................. AAACGGTATTGGAAAGAAATCCAACCCCCGAAGA 15809 33 100.0 33 ................................. ATATCATTTTGCTGCGCCTGCTGAATCTGTTGC 15875 33 100.0 37 ................................. CCAGCGCTCATAATCCTCTTGGTCTTTTTGCACAGAC 15945 33 100.0 35 ................................. ATAGTGTCATAGCAGGCCGTAAACAGCCCGAACAT 16013 33 100.0 34 ................................. CCGCCGTGCTGCATCCACTCACCTATTTCGGCGC 16080 33 100.0 34 ................................. TGTGCTGGGAGAGTTCGTCCCACGTGGCCGTGGG 16147 33 100.0 34 ................................. TGCCTATGGTTTTTCGGTCGTCCGTTTTGTTTGG 16214 33 100.0 33 ................................. GTCGTCCGCCTCCAATCGTTCGGCTACGCGATT 16280 33 100.0 34 ................................. TCGCTCAACTGGTGGAACTTCGCAAGCAATTCAA 16347 33 100.0 35 ................................. AACTAGATATGGCGAAACGAATCGAAAGATTACAG 16415 33 100.0 35 ................................. GGCCTTTGCCTCTGCTTCCTTAGCGGCAATCTCGT 16483 33 100.0 34 ................................. TCAAAACCTACACGGCCAGCCAACACCGGACGCA 16550 33 100.0 32 ................................. CAATCAGATTTTGAATTTTTGTTTACATTTAC 16615 33 100.0 33 ................................. TCCCCCAGCTGGTCGGCCAGCGTCAAAATACGC 16681 33 100.0 36 ................................. TCTTTAACCACTCCCACGCCAGCTGCAAGAAGGTAA 16750 33 100.0 33 ................................. CTCATCAAAGCGGACTTCACGGAAAATTTGGAT 16816 33 100.0 35 ................................. ATCTACGGATTTTCGGTGTTCCTCTGCCAGCTTTG 16884 33 100.0 33 ................................. CTCTTGTATCGTGTGGAGTATCATATCCTCAAT 16950 33 100.0 34 ................................. TCAATCCTAATTCCGAAGACGTTTTTCCACCCAG 17017 33 97.0 34 ......................T.......... CAACTGTCAGGTTTGCTCCGTCATCGTCAATGCA 17084 33 97.0 0 ......................T.......... | ========== ====== ====== ====== ================================= ===================================== ================== 22 33 99.7 34 GTCGCACTTCGTATGGAGTGCGCGGATTGAAAT # Left flank : GGATTGAAATTCCTTGTCGTATACGGCTTCTACCACGCTGCGGATGTTGCACTTCATATGGAGTGCGTGGATTGAAATGACACCAAGGACAATAAGGGGATTGTTGCTGATCGTCGCACTCCGTATGGGGGGAATTATAGTGCAGTACAAGAACGAATATTGATTTAAAGGATCTAAACCTATGAGTAACGGGTGCTAACATAGTCTGGAGAATGTACTGAGGAGGGCTGCCGCAGTTTTTAGGGAAGATCCTTTTTCCTGGTTGAAATCTGGCCTCAAGAGTTCATAATGGATTTCGAAATTCAAAAGAATAGCGACCGGTGCGAATGTCAAGCTCCCATAAAAACTCCGGCTCCTTCGCACCTCAAATGTTGTCGAATTAAAACGAAAAAGATTAACTCTCAAAAATGTCAATATCTATGCTATACTTTCTTTGTATACATCATAGACATTATCACACTATCTATGTTGATTTTGGATTGATCACACCTTTTTTTGCG # Right flank : TGGCTATGCCGGAATCAGTCCCAGGTTGATGGGCGTTGCACTCCATGTGAGCGTGGATTGAAATTGGAAGGTACCCGCGGCGCAGATTTTCATATTGGTCGCACTCATGTGAGCGCATGGAATGAAATTCTTGATTATGGCCTTGGCCAATCTCCTGGCCCTCGTTGCCCTCCATTCCGGAGCATGAACCGGGAATGATTCTTCTCCCTCACTTGCCCCTCCTTTTTCCGCTGCTGTGCTGAACGACTCACTTCCTCTTCCTTGTCTGGTTGTCTTGAAGGCCTGCTTGGATGCCCTGTTTGGCCAGCCTATTCTCTCGGTCTTCCAGTGGAGAGGAGCCGGGATTGGTGCTATACTGGGAATGATTGCGGCGGTAGAATGGAGTCTGGGCGGTTGCCGCGGATGCATAAACGGCGGTTTGACTGATAGCGTTTACATTCTGTTGCTGTCCAATATGCCAGCGGTTAGGGCTGTTCCCGAGGGGAGGGACGCGAGTAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGGAGTGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 40846-43896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 40846 33 100.0 33 ................................. CCTTGAATTTGTATACATTTTCGTGTTATTATT 40912 33 100.0 33 ................................. TGACCGGCCAAGGTAACAGAACACTCTCTGATG 40978 33 100.0 33 ................................. AGCTCTATGGATTCCTGCATCGGGACATAGGTG 41044 33 100.0 34 ................................. TTCGGGGGTTGGTCTGATGACGCGGCGTAAGATC 41111 33 100.0 33 ................................. GGGTTGGACGATGATCCCAGCACTGGGAGCCGT 41177 33 100.0 33 ................................. AGCTTTTCAAAAGCCGAATGGAGTCCAACGGAA 41243 33 100.0 33 ................................. TTCGCTTTTCTATTGTTTCTTGGATTCTTACAT 41309 33 100.0 34 ................................. CGGCGCGGCGAATTCCTAGCGCTGGAATGGACGG 41376 33 100.0 33 ................................. AGTATGAACAGCGTTATCAAAAAGGCAAGGGTC 41442 33 100.0 34 ................................. TTGCTGAAGAACTGGGTCATTTTGAAACAAGCAA 41509 33 100.0 34 ................................. CCGCGAAGACAGCAAGGCCGTCATAAGCTTCAGC 41576 33 100.0 35 ................................. TTGGCCTGTCCCCGGGTCAACTATCACCCCTCCTG 41644 33 100.0 33 ................................. CGATCCCTTGAAACTCTGGTATACTTCACTTTT 41710 33 100.0 36 ................................. GAACGTAGGAAATCGCACCGGCGTTGCAGAGCGCGT 41779 33 100.0 34 ................................. GAGTACGCGGTAACGTTTGTGATTAAGCCCAACG 41846 33 100.0 35 ................................. CGTAGTTAATCGACGTAAACGGAATCTGACCGCCT 41914 33 100.0 33 ................................. CTCCCGGCGGGCATCGAAATAAGCGAGAGCGTC 41980 33 100.0 34 ................................. GTATTCTCACGGATAAATTCGGTTGCTGACGGAT 42047 33 100.0 34 ................................. AATACCGCTCATCCATTGGTCACCTCCAAAGCCA 42114 33 100.0 33 ................................. ACTCAGGTGATCCAGACAAAATCCGCCGATGGA 42180 33 100.0 33 ................................. ATACTGGAGCATCTTTTCTGCATTCATGCCAGC 42246 33 100.0 33 ................................. AGGGCCATGTGCCGCTCATTGATCCGTTCGTGA 42312 33 100.0 35 ................................. AGGGTTGGCATGCACATTTCCAATGACTACCCCAT 42380 33 100.0 33 ................................. CGGTGATGTTGGCATTCGTTGCCGTGAGCACGC 42446 33 100.0 35 ................................. CCGGAGCATCCCAGTATGCTGCACAATAAAAAATA 42514 33 100.0 34 ................................. TATAGCTTTGACGACGCATCGCACGTCCTTACGC 42581 33 100.0 33 ................................. GATTAAGCCGGCTGTAATGTGACCCAGGTCTGC 42647 33 100.0 34 ................................. CTGCCTGACGAATTAGTTCATTAATCAACAAACA 42714 33 100.0 35 ................................. TACGACGTTCACCATTTCCTCAAGGAGGATCGCTT 42782 33 100.0 36 ................................. TGTGAATGCCATAGCCAGAATCATTTTGAGTTAGTG 42851 33 100.0 34 ................................. TCCTTGATGTAGTCCCGAATGTAGAAATGAAGCT 42918 33 100.0 36 ................................. GTATGGTGAGGACTGCCACCATAAATATAGCTACAG 42987 33 100.0 35 ................................. ATCTACCTTGCTTAAGAAATATCGCGCAACGGCAA 43055 33 100.0 35 ................................. TATGCAATAGTGTCATCAGCCCCGGAAACGGTGGC 43123 33 100.0 34 ................................. TTAGCCCCGACCTTGTGGTATTCGTGAAAAATAA 43190 33 100.0 35 ................................. ACGATATCGATATACTTGATTTGATTGGCCGTGTT 43258 33 100.0 35 ................................. GTATTTTATGCAATAGTGTCATGGCACCTTTAGCG 43326 33 100.0 35 ................................. AGCCCGGTCTGGAGCGCCAACGACTGATCACTCGC 43394 33 100.0 34 ................................. ACCAGGAAGGAGGTGAACATACATATGGCTGATA 43461 33 100.0 33 ................................. TTTTGACGATGCCAGCAAGGTGCTGACGCTCCG 43527 33 100.0 34 ................................. CCTGGGACGGATGAGGACAGCTACGGCAAAACGC 43594 33 100.0 35 ................................. CTTAGCGTAAACTTTACCGCCGTGGATTACGTACG 43662 33 97.0 34 ................G................ TGGTACAGCTGACGATGCAGCTGCTTTTAGAGGC 43729 33 100.0 35 ................................. AGCGGAGCGATGGCTCCGCCATAGGCTGCTGCACT 43797 33 100.0 34 ................................. ATCCTGCTCGGACGGCCCGCCACGATCAAAGCCT 43864 33 90.9 0 ........T......A.........C....... | ========== ====== ====== ====== ================================= ==================================== ================== 46 33 99.7 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : CGGAAAAACGGATCGAGGTTCCGGTTACCAGCGACAGCCACGGCGGAGGAGACTTATTGCTTGTCGCCGATTTTGTGAGTGTGCTGCGGGGACAAGAGCCGTCCATTTCCTCCACTTCTCGGGAAAAGTCGCTTTACGGGCATCAGATCGGCTTTGCTGGCGAGCAATCGCGTTTGGAAGGCAGAACCATCCAAATCGGCGGTATATAAAAAAGCGACGGGCCGCCGACCGCGGCAGCCATGATGATAGCCGCTGCGGTCGGCGTTCTACTTCGTATGGGAAGGCATGAATGAATTTCAACATTCAAGGAATGACAGCTGGTGCGAATGCCAAGCTCCCATAAAAACCCCGGCTCCTTCGCACCTCAGATATTGTCGAATTTAAACGAAAAAGATTAACGCTCAAAAATGTCAATATCTATGCTATACTTTTTTTATATGCGCTACAGATATCCTCGCGCAAGCTATCTTGATTTTGGATTGATCGTAGCTGTTTTTGCT # Right flank : TGTGCTTATTTGCAAAAGATATAGGATTTTCTGACCGGCCTCCTTTGAGGCCTTAAGGATGACAGGGTTGTTGCGGCTGCCGAAGCAGCCCGAGTATTTCGCTCCGCGCGTGATGTTCGTGATCAATCAGCTCATTGGCGCTTAATTTGTGCATTGGGTCCCTCCTTTTTGCATCTGCGGCCCCTGCCGGTCTGTTGCGGGTTTAGTGTATCATGTAACAAAGCGGCATGTACTGGTTAACAAGCGGGAATTGGGAGGGAACAAAATGAGCGAGAAAGAAGTAGAAGCAGCCGGCTGGGGCGCAATTGAGGAACAGATGAAGAGACTGTTTTGTCACCTTCGGGTTCTCGGAGTTGTATGAGAAGGAATCCGAAGACCCGAATTACAGCGGTTACGGATTCGAGTTGACCTTCCGGCTGGTCCGTTCTGCCGAAGAACAGGAGCCTCCGGCTTGGGCAATGAGCCTGCTGCAGAATATGGCCAGATATGTGTTCTCCAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 46956-48798 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 46956 33 100.0 34 ................................. CCCACCCTGCTGCTGTTGTTCGGTGCCTCGTTTG 47023 33 100.0 34 ................................. TTGGCTTCGGCGGCCGGATCATCGACAAAGGAGA 47090 33 100.0 34 ................................. CTCAAGCTCTTGTACCCCAACGGCATCCGTCCTG 47157 33 100.0 34 ................................. CAGTTCCACCGGTTGGTATACCACCAGTTCCGCC 47224 33 100.0 34 ................................. CAGTTCCACCGGTTGGTATACCACCAGTTCCGCC 47291 33 100.0 35 ................................. GCCAAGAGCTGCTGCCCATTCGGAGCCGATGGATG 47359 33 100.0 34 ................................. AGCACCGTGGCCGCGTACTTATCCGCCCCCTCAC 47426 33 100.0 34 ................................. AGCACCGTGGCCGCGTACTTATCCGCCCCCTCAC 47493 33 100.0 35 ................................. AGCTTAAACACCTACGGGAGATCGAACGTAACGGG 47561 33 100.0 34 ................................. CTGATCCATAGGCAACGCCGCGTCACTCGGTATC 47628 33 100.0 33 ................................. ACTTTCAGATAGCCGCCGTTGAATTTGTCGTTT 47694 33 100.0 35 ................................. TTTCAAATTCTCCGGAGAAAAATTTGTCTCCTTAT 47762 33 100.0 34 ................................. ATTTGAACCTCGGCCTGCTTTTCATCGAAGTCTT 47829 33 100.0 34 ................................. CCCACTACCACAGGAACCAGTTGCAGCATCCATG 47896 33 100.0 34 ................................. CCCACTACCACAGGAACCAGTTGCAGCATCCATG 47963 33 100.0 35 ................................. TTTCTAGCCCAGGCGCGTGCGCGGGGTAGATCGTA 48031 33 100.0 35 ................................. AAAACCTGATCGCACAATTAGCGATTGTTGGTATG 48099 33 100.0 35 ................................. AATGTAATAATTGCATATCCACATTCCTTTTTTAA 48167 33 100.0 33 ................................. AGCTCCTCAACGGATGCAGCAGCCGCCTTTGTG 48233 33 100.0 35 ................................. TGTTACTTGCGGGAGGGATAGTCATGAGCGTAGTC 48301 33 100.0 33 ................................. GGTATCATCGTGCGCCACATGATATTTTGTTTC 48367 33 100.0 33 ................................. AATCAAAAACCGGTCCCCCGCCAGGATGGTCCG 48433 33 97.0 33 ...............A................. TCTTGGATTTTTTCAGTGATATATTGAATCATG 48499 33 97.0 34 ...............A................. TGAATCCGGAAAAAAGGGTGGGACTGGATTAGAA 48566 33 97.0 33 ...............A................. TTCATAATCGTTAGCGCTTGGGCTAACTCCTTG 48632 33 97.0 34 ...............A................. ATCGATGGATGGAAGAGGAGAATGGTCAATGGGA 48699 33 100.0 34 ................................. ATAAAACTGGCATATCCAGTAGTCTGGCACACGG 48766 33 93.9 0 .............A..G................ | ========== ====== ====== ====== ================================= =================================== ================== 28 33 99.4 34 GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Left flank : GAATGTATGAGTTATTAACATACAAGAATTGAATTATCTTTATCGATGAATCATATCTATTTTTGCTGCCGCACGCATGGAGTGCATGGTTTGAAATCCAGTATTACGGAGAGAGCCGCGGCGGATGCGGGCATTAAAATGCAATACAGGAACGAATATTGATTTGACAGAATCTAAACCTATGAGTAACGGGTACCAACGTCGTCTGGAAAATGTACTGGGGAGGACTTCCGCAGTTCTTAGGGAGGGTCTTTTTTCCGGGTTAAAATCTGGCCCCAGGAATTCATAATGGATTTCAAAATTCAAAAGAATGGCGACTGGTGCGAATGTCAAGCTCCCATAAAAACTCCGGCTCTTTCGCACCTCAAATGTTGTCGAATTAAAACGAAAAAGATTAGCCCTCAAAAATGTCAATATCTATGCTATACTTTCTTTATATACACCACAGACATCTTCGCGCTATCTATCTTGATTTTGGATTGATTGCACCTTTTTTTACA # Right flank : TATCAATTCCGATAAATGAGGAGATCGGCAGCCTAGTCGCACTTCGTATCGCCCTTCCCGTAGTGGTTATGTGTAACTTCCATTCCACAAGATGGGGCGATTTTTTGTGCCTATTTTTAGCGTTCAGTAAAAACGGGGCATCCGGCGGTCAGTTCTCACTGACTTTCTGGATAGCCCCTTTTTGTTCTACGCATATGTCATCGCATAGGTGCAAAGTCTTTCACTTGCGATAAAATATTGTCGATATGCTCCAAGGTGTCGGAAGAGAGCTCAACGCCAACTGCTTTAACATTCTCTTCAATTTGTGCTGGCTTTGTTGCACCGATCAAAGCGGAGCTAACCCCCTGTTGCCGAAGCACCCACGCAAGCGCGAGTTGAGACAACGAAAGCCCAAGTTCCTTGGCTACATTCTCAAGCTGTTGAACAACCTGCAGCACCTCATCACGAAAATAACTCTTGATTACGCCATTAATCGACTCGTTTGCGCCTCTGCTATCCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 54722-56171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 54722 33 100.0 35 ................................. AGACAGCGAATGAACGGTTGAAACTATATGCTGCA 54790 33 100.0 35 ................................. CAATTATTTGCTTTGGAAATATATGATCGTTGCGT 54858 33 100.0 34 ................................. AATCCGGTCAATATGCTCCACAACAGCAACTCAT 54925 33 100.0 35 ................................. AGCGCTCTTTTGGTTAATTTAGACCCGGCGCTGTT 54993 33 100.0 35 ................................. ATTGACATTTATATGGCGAAGGAGCAAGGGCTCGA 55061 33 100.0 33 ................................. TTCAACCAGCCACCCAGCAGGCGGCCGATCTCC 55127 33 100.0 34 ................................. TTTTTTGTCCCCTGGATCATCTGGAAGCACATGA 55194 33 100.0 34 ................................. AATTCGTTTGTGGAAACGTTCCTGAAAAAGCGGG 55261 33 100.0 33 ................................. CAAGGTGCTCCTGATTTCGGGAGCCTTGGCTCC 55327 33 100.0 34 ................................. GGCGGTGAAGTCCTTGCCGTTGTCGATCTTGATC 55394 33 100.0 34 ................................. GTTCGGCCAATCACATTCCGGGTGAGTGAAGCAA 55461 33 100.0 37 ................................. GATTGGGATATTTGCCGCATTGGTGTTTCGATAGACA 55531 33 100.0 35 ................................. CAATTCGGATTAGCACTTGCCGGCTTAACGCTATA 55599 33 100.0 34 ................................. GCCACGCCGTCTCCAACATATTTAAATGCCGGGT 55666 33 100.0 36 ................................. GGACCATCCACATCGACGACAGCCGGAACATCACAT 55735 33 100.0 34 ................................. GCTTTTACGGCCATCAGACGCGTCTAGGTCGTGC 55802 33 100.0 34 ................................. AATCAGCCGTTGCGGCAGCGGCAGACGCCTATGT 55869 33 100.0 35 ................................. AACATGCAAGGGGAAAGCCCGGAGATAATCGCCCA 55937 33 100.0 33 ................................. CGCAATCTCCGCAATAATTGTTGTATTTCATCA 56003 33 100.0 35 ................................. CGTCGAAGCCGCCGGAAAAGGACGATTTTGAAAAG 56071 33 100.0 34 ................................. GTTTCAGTGGAAAGAGCTTTCAACGGGCCGAGGC 56138 33 72.7 0 ....T.............GAAT.AT.G..C... | A [56152] ========== ====== ====== ====== ================================= ===================================== ================== 22 33 98.8 34 GTCGCACTCCGTATGGGGTGCGTGGATTGAAAT # Left flank : GCGAAATCCGGATGGCTTCCCATGCGCTGTATCTGAACCAGATGCACCGTTATTCCAATCGCAGGCAGGAGTCACTGGACTGGAGCGGCATGCTGGGGGCCATGAGCTTTGAAGGGGAACTGACGGCTTTCACTCCTTGGCTTCACGCAGCCCGTATTCTGCACATTGGGCGCAACTCTACCTTTGGATGCGGCCAACTGGATATTGTTTGTCGGTACATGTAGTTTTCATGTGTTGCTGAGAAACATAGACAAGTTTGATGCCACCAGATCAGATGCCACTGCTGCTAAAAGCTGACGACTCCCTCCGGTGAAGGCTGGTGCGAATGCCAAGCTCCCATAAAATCCCCGGCCCCTTCGCACCTCAAATCTTGTCGAATCGAAGAGTGAATAATCCATTTCCGCTCGTGTCAACATCTATGCTATACTTTATTTGGCACAAACAGCAGACCAAACAGCCGAATTGTTCGCAGAACGCTCTCAATTGGGCCTGTTTTTGCA # Right flank : TACAAGAACGAATATTGATTTGAAGGGTCTAAACCTATGAGTAACAAGTACTAACATAGCCTGGAGAATGTACTGAGGAAGGCTGCCGCAGTTTTTAGGGAAGAACCTTTTTTCTGGTTGAAATCTGGCCTCAAGAGTTCATAATGGATTTCAAAATTCAAAAAAATAGCGACCGGTGCGAATGCCAAGCTCCCATAAAAACTCTGCTTCCTTCGCACCTCAGATATTGTCGAATTAAAACGAAAAAGATTAAATCTCAAAGATGTCAATATCTATGCTATACTTTCTTTATATACACGCCAGACATCCTCGCGCTATCTATCTTGATTTTGGATTGATCACACCTTTTTTTGCTGTCGCACTTCGTATGAAGTGCGTGGATTGAAATTCTGGGTTAACATGGAGTACAGCGTACCGGATCAAGTCGCACTTCGTATGAAGTGCGTGGATTGAAATAATCGGCTCAACGAGTTTATGGCCGTGATGCAGCCGTCGCACTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 4 56526-57639 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 56526 33 100.0 35 ................................. TCTGGGTTAACATGGAGTACAGCGTACCGGATCAA 56594 33 100.0 35 ................................. AATCGGCTCAACGAGTTTATGGCCGTGATGCAGCC 56662 33 100.0 36 ................................. GTTTATCTCCTGTAGGCAATAGCTGCCTTATATCTC 56731 33 100.0 33 ................................. AAGCCGCCGGCAGATGTATACCCACCAACATTG 56797 33 100.0 33 ................................. CGATGCTCTTTGCCGAAGGCTTCAGCCACAGTC 56863 33 100.0 34 ................................. AGCAATATATCGACCTTTGCCGAGAGTCCTGCGC 56930 33 100.0 34 ................................. CATATATAGACATCCACCACGCCCAGGTTTTCCG 56997 33 100.0 34 ................................. TTCCTGTCCCATACTTCCCGTCCTCCTGTTGACG 57064 33 100.0 34 ................................. CGCTTGTTCAATATTCAGCACAATGGTTTTCGTC 57131 33 100.0 34 ................................. TGTTAACGCCGTTTTTAATCTGGCCACTTTGTTT 57198 33 100.0 35 ................................. TATTTATGGTAGTTTTCATTTCATCATGCTCATTA 57266 33 100.0 36 ................................. ACCCTCAAGTGGGGATGATGGTGGGGGTAGTGGACT 57335 33 100.0 35 ................................. TGACCCTGTCCCATGGCACGCAGTACGGTTCGTAT 57403 33 100.0 35 ................................. CTCGATCTGCTTGGTCATGGCCTGGGCGATTTCTT 57471 33 97.0 35 A................................ CTCGATCTGCTTGGTCATGGCCTGGGCGATTTCTT 57539 33 93.9 35 A......................A......... ATTGTTTTACCTCCAATCTAGCAATACTGTTGGTT 57607 33 72.7 0 A..AT.T.......AG.......A.T...C... | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 97.9 35 GTCGCACTTCGTATGAAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATCGTCGAAGCCGCCGGAAAAGGACGATTTTGAAAAGGTCGCACTCCGTATGGGGTGCGTGGATTGAAATGTTTCAGTGGAAAGAGCTTTCAACGGGCCGAGGCGTCGTACTCCGTATAGGGGGAATTATAGTGCAATACAAGAACGAATATTGATTTGAAGGGTCTAAACCTATGAGTAACAAGTACTAACATAGCCTGGAGAATGTACTGAGGAAGGCTGCCGCAGTTTTTAGGGAAGAACCTTTTTTCTGGTTGAAATCTGGCCTCAAGAGTTCATAATGGATTTCAAAATTCAAAAAAATAGCGACCGGTGCGAATGCCAAGCTCCCATAAAAACTCTGCTTCCTTCGCACCTCAGATATTGTCGAATTAAAACGAAAAAGATTAAATCTCAAAGATGTCAATATCTATGCTATACTTTCTTTATATACACGCCAGACATCCTCGCGCTATCTATCTTGATTTTGGATTGATCACACCTTTTTTTGCT # Right flank : TGGCAGCCAGTGGCGTTTTTTTGCTGGGGGACGCGGCTATGCGGGATACCGAAGACTGATGCAAGTTCGGAAGAGGCCCTTCAATCGGTTTTGCCGATTTTGTGGCTTCCATAATAGTATCCGGCTTGCGATAGGGAGGCTCATTTGCAAATATGCCTTGAGGAGAGCTGGGGATGCCTCTGTTTTGCTTTGAACAAGTAGCGCCCTCTTTAGGAATATACCTTAAACAAGGAGAGTCGGATTAATGGTGAATAACAAGGTGCTGAGACGTATTTATGATAACTACGCTTATTCCAATAGCAGAATGGTAGAGGAAATGGAGCTGTCTTCCGAGCATGGCGGGCTGACAGGCGGGTTCCGTGAGGGGATGTGGCTTTCTTTTTTTCGCAGCATTATTCCGCTTAAGTATCAGTTGGCCCAGGGGGTCATCATTATTGATTCTGGACGCGAAGTATCCAATGAGGTGGATATTGCGGTCTATGACGAGACGTATACGCCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGAAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 5 68780-70886 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 68780 33 100.0 34 ................................. CAGTCCATGCTAACCGTTGCTTTAATGCTCTGGT 68847 33 100.0 34 ................................. ATTGGCCTGCCGGAAGGGTTAGACTCGCTGAAAG 68914 33 100.0 31 ................................. TACGAAGTATCGCGAGTTCCAGCGGAAGCGC 68978 33 100.0 34 ................................. AAACAAAAATCACCTCCGATCCAAAGCCAATTTG 69045 33 100.0 36 ................................. AGGGTTCCGTCTTTTGTGATGGACACAGGATGCCGG 69114 33 100.0 34 ................................. CAAGCCATCAAGGCCCACAGCGAGTTAAACGCCA 69181 33 100.0 34 ................................. AGAAAAAATATCTGCTAAATCAAAATTTTCGGTA 69248 33 100.0 33 ................................. CAAAGCCGTTATGCGCTGCCGAAGTGCTGCCAA 69314 33 100.0 34 ................................. CCCACCGAGTCCAGAAGTATTAAGGTTTTGGACT 69381 33 100.0 34 ................................. ACTACGCCGTTCTTTGTACGCCGAGCGTCCGCCA 69448 33 100.0 34 ................................. CGGTTGTTTACGCCGATTGTACGCTGATTTTAGC 69515 33 100.0 34 ................................. CGGTTGTTTACGCCGATTGTACGCTGATTTTAGC 69582 33 100.0 35 ................................. ACGCGTAGGCTTATATTCTGCGAAGCAGATGTCGC 69650 33 100.0 33 ................................. CGCAAAATGTGATCGCAGCAATTCCGGATACGG 69716 33 100.0 34 ................................. CTGTACATTCTCGGCCTGATGAGCAAAACCGGCG 69783 33 100.0 33 ................................. AATCCAGGGGCGGTGGTAACTATTAATCGATAA 69849 33 100.0 33 ................................. AATCCAGGGGCGGTGGTAACTATTAATCGATAA 69915 33 100.0 33 ................................. ACGCATCAATTTGAATACAATTGGGAAAATGAA 69981 33 100.0 34 ................................. AGGCACCGCGCCGCGGAGGGGTGGAGGAGTATAG 70048 33 100.0 34 ................................. CTGCCGGCTCTTGTAGTCCCCACGGAGCAGACCT 70115 33 100.0 34 ................................. TGGCTTCATTTACGTCCACTACTCCGGTAGATGT 70182 33 100.0 34 ................................. CGTATGCCAGAGGAAATCCAGGAGTAACAGATTC 70249 33 100.0 34 ................................. CGGTTGGAGTGGATACCAGGAAGAGGCGACCGAT 70316 33 100.0 35 ................................. GTCCGTCCCGCCAAGTCACAGCCGTAGAAGCACCA 70384 33 100.0 34 ................................. TTGCGGAAGGATCTGCGTCGGCGATAGCGGAGAG 70451 33 100.0 34 ................................. CGCAACTTATCGTTAACGTTCTCGCCGCGAAAGG 70518 33 100.0 34 ................................. TTTGCACGATACGGGCAAATTGTGTCGGTGACAT 70585 33 100.0 33 ................................. CGTTCCGCTGCCGGATTACCGCTAGACGAATGG 70651 33 100.0 36 ................................. GATGAGCTGCTCGGTATCAATACAATGTCGTTAATT 70720 33 100.0 35 ................................. AACATCGTAGGAATATGCTCCAGCTTTTTCTTGAA 70788 33 100.0 33 ................................. GACTTTGAGGAGGGGGCATTGGCGGAAATGGTA 70854 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 32 33 100.0 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GCGAAATCCGCATGGCTTCCCATGCGCTGTATCTGAACCAGATGCACCGTTATTCCAATCGCAGGCAGGAGTCACTGGACTGGAGCGGCATGCTGGGGGCCATGACCTTTGAAGGGAAACTGACGGCTTTCACTCCTTGGCTTCACGCAGCCCGCATTCTGCACATTGGGCGCAACTCTACCTTTGGATGCGGCCAGCTGGATATTGTTTGTCGGTACATGTAGTTTTCATGTGTTGCTGAGAAAAATAGATAAGTTTGATGCCACCAGATCAGATGCCACTGCTGCTAAAAGCTGACGACTCCCTCCGGTGAAGGCTGGTGCGAATGCCAAGCTCCCATAAAATCCCCGGCCCCTTCGCACCTCAAATCTTGTCGAATCGAAGAGTAAATAATCCATTTCCGCTCGTGTCAACATCTATGCTATACTTTATTTGGCACAAACAGCAGACCAAACAGCCGAATTGTTCGCAGAACGCTCTCAATTGGGCCTGTTTTTGCA # Right flank : TACTGGAAACACAGCTTAAATGTAGCCCATGTCGGTCGCACGCTGCATGGAGTGTGCGGTTTATTGGTCATTTCATTTGACTCGAAACAAGAAGAAGTTTATACTTTGTATAAACGATCAGGGTGGAGGGTGCCATGATGCAGGTTCAGAAGTGGGGCAACAGTTTGGGAGTTCGCATACCCAAAGCCTTAGCTATGAAGGCAGGACTTGAAGAAGGCTCAGAGGTTGATATTGATGTTGAAAAGGGTCATCTGGTCATCAAACCCAAAACAAGGACTCTAGAAGAGCTATTATCCCAAATCACCCCGGACAACCTTCATTCCGAGATTCAGACCGGAAAAACGCAAGGACGGGAAACATGGTAGTAAATCGTTATATTCCGGACCGCGGTGACCTGGTTTGGCTTCAATTTGATCCCCAAGCGGGTCATGAGCAGTCAGGTAAACGCCCTGCTTTGGTAATTTCACCTAGCTCCTACAACAGTAAGGTAGGCTTGACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 6 71790-72624 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000039.1 Paenibacillus sp. YN15 scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 71790 33 100.0 33 ................................. TGCAGCATTTCAAGAAAGTGCTGAATGTACTGG 71856 33 100.0 33 ................................. CGGACAGCGGTCGAGCGGATGGTTAACCGAAAA 71922 33 100.0 33 ................................. TCTTCACTGTTGAACCGTTAATCTCCGCATCCA 71988 33 100.0 34 ................................. ATCTGTAGAGTACGAAAACGCCATAAACAACGAA 72055 33 100.0 34 ................................. CTGAACGGCAACGTAAAGGGATATTGCGCGGCTA 72122 33 100.0 34 ................................. TGATAGCAGGCGTCTTGGTAGGTTTCAAGTTTGC 72189 33 97.0 34 ..............................G.. CGGAATCTCCCAAGCACTACAAATATCCGTGAAC 72256 33 100.0 35 ................................. TCTAAGTCACTCAAAAACACGATAGGTTCGCGTGT 72324 33 100.0 34 ................................. CGGTTGGACTGAAGCGCGATCCGCAGGAAGAACG 72391 33 100.0 34 ................................. TCGGACAAATACGACGTCATTATCGCAGACCTAC 72458 33 100.0 34 ................................. GTTTATCCGCGCATGGACGACGATTCCGTACGTT 72525 33 100.0 34 ................................. TCCAGCATCCATACGCGAGGGATTTCGCCGTCTA 72592 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 99.8 34 GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Left flank : TTCAATTTGATCCCCAAGCGGGTCATGAGCAGTCAGGTAAACGCCCTGCTTTGGTAATTTCACCTAGCTCCTACAACAGTAAGGTAGGCTTGACATTATTTTGTCCGGTTACCTCAAGAATGAAGGGATATCCTTTTGAAATATTGATTCCGCAGAATCTTCCCATTGAAGGAGTCATTCTAGCTGACCAGATAAAGAGCCTCGACTGGAACTCTCGCCAAGCTATATTTATTTGTAAAGTGCCCCAAGCTATCTTGGATGAAGTGATTTCTAAAATAGATGTGCTGATTCATTCCTGATTTTGAAGAAAGGTTTCTAGTGCGAATGTGAAGCTCCCATAAAAACCCTGGCTCCTTCGCACCTCAAGTTTTGTCGAATTGAGATGCAAACTATCCATTTTCGCTCATGTCAATATCTATGCTATACTTTATTTGGAAGAAACAGCACATCAAACAGCCTACATTATTCTCAAAATGCTCTCAATTGGGCCTGTTTTTGCA # Right flank : GTAACGGAGGAGATATGTAAGCGTCAAATACGGACCACCTAGCAAAGCTGTCAAATCTATGAGATGCTGGCATTAGGACGAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 238707-237732 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMFA01000001.1 Paenibacillus sp. YN15 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 238706 33 100.0 35 ................................. CAGAAGTACCTCCCTGCTGAGTCGCTGGAGATCCT 238638 33 100.0 35 ................................. CCATCGTGTCAAGCGCTTTTCTAATTGCCACCAGG 238570 33 100.0 34 ................................. ATACGTTTACCCTGGCGGAGAGAGTGGCGACAGG 238503 33 100.0 35 ................................. CTTGTTTTTAAAGCAATCTCTTCTCCAGTTTCTTT 238435 33 100.0 35 ................................. GCCAAGGGGTGAATACATAGAATGGACATGCAGGC 238367 33 100.0 34 ................................. GTCACATCAACGATAATCGGCGTCAACGTTTCCA 238300 33 100.0 34 ................................. GATTAGTTTTGCTTCCAAACGGTCTAATTTGCGG 238233 33 100.0 34 ................................. ATGCTTTTGCATCATGTTATCCTGATACGTGGTC 238166 33 100.0 33 ................................. ACGTATTGGGACGAAAAGCTGCGCGGCGTCTTC 238100 33 100.0 33 ................................. GATAGTGCCAGCCTTGCGCACGAGACGGAGCAG 238034 33 100.0 37 ................................. CTTGCGGAATTACTACGTAAAGCCAAGATGACGCAAC 237964 33 100.0 32 ................................. GGCGCTGTCTTACGCGTAGCATCCGCTACCGG 237899 33 100.0 35 ................................. AGCTTGATATTTAAGTTTTTGATAATTGGTTTGAA 237831 33 100.0 34 ................................. ACCCGTATGTGATCCTTCTCTCGCTTCCAAGCCT 237764 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 100.0 34 GTCGCATCCCGTAAGGGGTGCGCGGATTGAAAC # Left flank : CAAATTCGCTCAAAAAACAGGTTTTGACGAAAACGATCTTGCCTTTTTCTTTGAAGCGCTTCAAAATATGTTTGAACTGGACCGTTCCGCATCCAGAGGCAAAATGTCCGCCCGTAAATTAATTGTGTTCAAACACGAGTCGGAACTGGGGAATGCTCCCGCGGCGGCATTATTTGATTTAGTTGAAGCGAAACTGATTAATCCGGGCCAGCCTCCACGGGCATATCGGGAGTACGAGATTACCTTGGACAAGGCATCTGTGCCTGAAGGTGTTGAAGTGTTGGAACTGCTTTAGACACGCGGATCTAATTGTCCAGGAAGGTGCGAATGCCAAGCTCACATAAAACCCCCGGCTCCTTCGCACCTCAGAATTTGTCGAATGACAGTGTATAAAGGAACAAAAATAGTTGTCAAGACAGCATCCATACTTTATTTAGTTGCTTCCAGAGAGAATAATAATTTATTTTTCTAAAACCGATATAGATACAAGCATTTTTGCG # Right flank : CCTTACGTCAATGCCAGCATCTACGTGGACGATCATGTCGCATCCTGTATGCCAGCCTATGTCGTGGAGTTGTCCCCTCACTGGAAAGCAACATTTACTCCTTAACCCGAAACGGCACCACAATAGAGGCGATCAGGCCCCCCTCCGGGCGGAGACGGTATTCCAGTCCGTAGGCTTCCCCGTAATGGAGCTGGATGCGCTGATGCACATTGCGGATGCCGTAGCCCTTGTCCCGCAGCTCGCCGTTTACGATCAAACGCAGCTTTTCCACATCCACCGGAATAAAGCCGTTGTCCTCCACCAGAATATGCAGCTCCTCCCCCCGGTTCTTCACGCGGACCCACAGCTGGCCTTCCCCGTCCATACTCTGCACCCCGTGGAAAATGGCATTCTCCACCAGCGGCTGAATCACCACCTTGGGCACCATACAGTTCTCCAATCCCTCGTCCACATCCCAGAATACCTCGAATACGCCGGGATACCGCTTCATCTGAAGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTAAGGGGTGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA //