Array 1 82669-84353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXH010000006.1 Parabacteroides merdae strain DFI.4.154 DMGFNDKJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 82669 32 100.0 34 ................................ GTGATTATATTGTACCTGCCACTGGTGCCTGTGT 82735 32 100.0 35 ................................ ATCTTAGTCTGAATAGGGAACTGCATGGGCATAAA 82802 32 100.0 35 ................................ CAGAATTTAAAAGGTAACAATGCTCTATGTCCGAA 82869 32 100.0 35 ................................ CAAAGCAAGTGGCAAGACCAGCTTGAGAGCCCAAA 82936 32 100.0 35 ................................ AGAATTTAAAAGGTAACAATGCTCTATGTCCGAAA 83003 32 100.0 34 ................................ GTAATGTTAATGCTTATCAACGCTATCTTGAGCT 83069 32 100.0 34 ................................ ATCCTTACGAGAACGAATATAAGCGGAACCAATA 83135 32 100.0 34 ................................ ATTTTTGTTTGGATCGGGAACATCATAGGCATGA 83201 32 100.0 33 ................................ CCCATTCTAACTAAGGAAAAGGGATATACGGTT 83266 32 100.0 34 ................................ TTTAAATTATCGACCATGTTACGAATGTCACGCA 83332 32 100.0 34 ................................ ATCCTTACGAGAACGAATATAAGCGGAACCAATA 83398 32 100.0 34 ................................ ATTTTTGTTTGGATCGGGAACATCATAGGCATGA 83464 32 100.0 33 ................................ CCCATTCTAACTAAGGAAAAGGGATATACGGTT 83529 32 100.0 34 ................................ TTTAAATTATCGACCATGTTACGAATGTCACGCA 83595 32 100.0 34 ................................ ATCTTGGTTTGGATCGGAAACATCATCGGCATAA 83661 32 100.0 33 ................................ CATAATCCAACACTGACAACGCTCGCGAATATA 83726 32 100.0 35 ................................ ATCTAGCGTACGTGCTGCTGGATTATCCAACCTTA 83793 32 100.0 35 ................................ TCGTTACTATGTATGCTAAGGTTAATAACATCGAT 83860 32 100.0 33 ................................ TATCAGAGGAAAGGGAAAGGAAGGAGAACCGGA 83925 32 100.0 34 ................................ AGATTTACCAGTCTCAGGTAAACGGCGATTTTGG 83991 32 100.0 33 ................................ TTACTTTTAAGAAAAAACAAACTCCTGCTCCCG 84056 32 100.0 33 ................................ TCGAAAGAACGGAACATGATAAAGTTACGCAGA 84121 32 100.0 33 ................................ CCAATGCGAATAGTTTTTATAGCATTGATTCTG 84186 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 84251 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 84322 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 128270-131264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXH010000006.1 Parabacteroides merdae strain DFI.4.154 DMGFNDKJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 128270 32 100.0 34 ................................ TTAAGGCGCAGATCTCTGAAACTTGGTCTCGTAC 128336 32 100.0 33 ................................ ATTTTTGTCTGGATCGGGAACATCATCGGCATA 128401 32 100.0 33 ................................ CTCTTAAGGCTGGTGAAGCTATTAATATGCAAT 128466 32 100.0 34 ................................ AAAATCAACTTTATACGCATTGCCGTCCTCGTCA 128532 32 100.0 34 ................................ CCAAAGAGTATTGCGATCCGCATCCACTTTTAAT 128598 32 100.0 34 ................................ ACGATATGTCAACCATTTAGGCAACAAAGAATCA 128664 32 100.0 35 ................................ ATCCTTTCGAGCACGGACATAAGCAGAACCAATAC 128731 32 100.0 33 ................................ ATTATCCAACATTGGCAACGCTCGCGGATATAG 128796 32 100.0 34 ................................ CGAGATCAACTTGCTTTTCTGACCTTCGGTATAT 128862 32 100.0 34 ................................ CATGATAGCACGAGTTGCCAAAGCATTGGCTTTA 128928 32 100.0 35 ................................ CGTTTTCCAGACATCACATTGTCGATGTATGACAA 128995 32 100.0 33 ................................ CAAATAACGCTGATAAGCATTAACATTACGAAA 129060 32 100.0 35 ................................ ACCAAGGCACGTCCCTATAAAATCGAAGCCCGGCA 129127 32 100.0 33 ................................ TTACTTTCGCAGTCGAGAACAGTATTTAAAAAG 129192 32 100.0 33 ................................ TGAGGTGGTGGATCATATCATCCCTATAGCCAT 129257 32 100.0 34 ................................ ATTATATTATTCTTTATTTAATTGTTCGTTAATC 129323 32 100.0 35 ................................ CAAAGAGTACGCAAAGGAACTTTATAGAAAGACAA 129390 32 100.0 33 ................................ CAGTCCAACGAATACGATAACTGGCAGAATCAA 129455 32 100.0 34 ................................ GCTCCGTTATCTTGCATGTGGTGAGTACGGCTCT 129521 32 100.0 33 ................................ TTGCCGTCATGTACGGTAACCTTCTCGGTACAG 129586 32 100.0 34 ................................ TTTGTAGCTAAATCCGCGGAACTGGTTTAACTCG 129652 32 100.0 35 ................................ GCCACGCCTAAAGGCTCGCTACATTAATGGATAAT 129719 32 100.0 34 ................................ ACATACTGCATAACAGAAAAGCGCAATTCAGGTA 129785 32 100.0 34 ................................ TTCAGTGGTATTATATACCGAATAATAAGGAGTA 129851 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 129916 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 129983 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 130049 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 130114 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 130180 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 130247 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 130314 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 130379 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 130444 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 130511 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 130576 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 130642 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 130708 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 130773 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCTCTGAGA 130838 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 130906 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 130972 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 131036 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 131102 32 100.0 33 ................................ AACGTAGGATTTAGAGTTGATATTAACAAATGG 131167 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 131233 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 46 32 99.7 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //