Array 1 143033-141235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOA010000011.1 Actinomadura sp. PM05-2 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143032 29 100.0 32 ............................. TACGGGGGGAAGGTCACCGACCCGGTCGTCAA 142971 29 100.0 32 ............................. ATGGCGCCGAGCTGCAGACGGATCGCCTCATG 142910 29 100.0 32 ............................. GGCATCCATGTCCGCCTGAGCATCTCGGAGCA 142849 29 100.0 32 ............................. ACCGCTCGTGTCGCCGCCGAGCGGGCTCTCGC 142788 29 96.6 32 ............................T TCGATTGCGATTGTGGGATCGCTTTCCTGCCC 142727 29 100.0 32 ............................. CCAGGCGGGGGGAGACGGGGCAGCGCTACGCC 142666 29 100.0 32 ............................. TGCTCCCATGTCTTGGCGTCAGCGGAGCGTCC 142605 29 100.0 32 ............................. GGTATTGAAGACACGTTCGCCCGCTTCGGTTC 142544 29 100.0 32 ............................. CCGAGATCACCCGTACACTCGCCGCCCAAGCA 142483 29 96.6 32 ............................T CGCGCCCGCCGCCCGCGACCGCCACGAGTGGC 142422 29 100.0 32 ............................. GTGATCGAGACGCCGTGGTCGGGGTGCATGCC 142361 29 96.6 32 ............................T GTGAGCGCGCCGGCGTCGATGCGGCGCTGCTG 142300 29 100.0 32 ............................. ATATGGCTGTCTCGGGGCCGGCCGCTCGCGTT 142239 29 96.6 32 ............................C GCGACCTCATCGACCACTGCCGCGAGCGCCTC 142178 29 100.0 32 ............................. AGCGGCACGAACAAGTTCCGGGTCCGCACCCG 142117 29 100.0 32 ............................. CCGGTGACGCCATGACGCCCCGCTACCAGGTC 142056 29 100.0 32 ............................. TTGGAGTTCCGCGCGGTCTCGTGGGTCATTTC 141995 29 100.0 32 ............................. GCGCTCCAGAAGGCCGGTCTGCTTCCCGGTGA 141934 29 96.6 32 ............................C GTCCGGGCAGGCCGGCGCGGTCAGGCTGATGC 141873 29 100.0 32 ............................. GAGGCCGCCGAGCACGACGGGGTCATCGTGGC 141812 29 100.0 32 ............................. CCGGCACTAACACCCCCGTGCTGCTCGCCCGC 141751 29 100.0 32 ............................. TACCGGAGTTCGGGAGTTCGGAGGTGTCGGAG 141690 29 100.0 32 ............................. GGGATCTACGCGATCAACGCGGGTGACCAGCG 141629 29 100.0 32 ............................. GCGGATCTCGTTGAGCCCGTTGACCGGAGAGC 141568 29 100.0 32 ............................. CCCTCACCAGCGCCGGATTCGACGCCGCGGGC 141507 29 100.0 32 ............................. TCGGTGATGGTGACGGTGACGGTGCTGCCGTC 141446 29 96.6 32 .......................A..... GTCGCGAGGGACCTCGCGTGCCTGGTCATCGG 141385 29 100.0 32 ............................. ATCGGCAGCCCCGCCAACGTCCGCCGCGCCCT 141324 29 100.0 32 ............................. GAGAAGGGCTCCTCGCCGCCGCCGATCCGGCG 141263 29 89.7 0 ............TG..............A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.0 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : GAGCCGAATCGGCATATTCGGGGCTCTCGTCCAGCAGACGCTTGAAGGGGCTTTGCACCAGTGTCTGGAAGGACGGCGAGATCTTCCCTATGTCGTGCAGGCCGGCCCAGAAAGAGATCAGCTTTCGCATGTCCTGCCGCGGCAGTCCGAGCACGTCCGCCTGCGCCAGGACGGGAGCGCCAGGTGCCATGGCATCGTAAAGAGCGCCGGCGACGGCTGCGACGTCCACAAGGTGGCATACCACTGGGTAGGGACGCGCGAGGCCGTGCTCCTTGCCCCAGAGCCGGGCATCAACGCGTCCCGCTCCCTGCTCACGCCTCTCTAACTCGTCTGCGCCCATCACGCTCCCGGGTTGAACGACCACGAACAGATACGAGCTAAGCAGACGACACTCACAAAATCGGGCTCGTTCTAGAATTTGGCCATGCCACCGCCCGACCGCACCTGGACAGCAATGTCTCAAATTGATAACGGCCCTACATAAGCCCAGGTCGCGAAGT # Right flank : TCGTCCTTTGGGCACGTTCCCGTTATGGGAACAACATGGGAACAGGCAGCACTGTACGGGCCAGGACTGCATGTGATCGAGGATCATTCGCCAAGGCTCTGAGCAGGCAATACAGCACTGCAGCGCATTGCGGGAGACACCAGGTCAGTGGCTGATCAGTCTTCAAAACCGATGGTCCCGAGCACCTCGGGACGGCGGGTTCGATTCCCGCTCGCCTCCGCCACCAGCCCCTTCACCGCTTCCCCCCACCTCCCCACGCGACGCCGGGATCTCGCTTGGACACCGCGATGGGAACACCTCGCCATGATCGTGTCTGAGCCGGCTTCTCGATGCCCGCTCCGCGGAGAGTGATCACGTCTTCGGGGGATGGCGCTCGCGCCGGGGTCACCGCAGCGGGTCGGGGCGTGAACGGGGCGCCTGGCCGGAGCGGTGCACGGTGAGGGAGGCGATGCGGAAGGTGATGGGGCGCGGGCCGGTGGGGCGGGCGTGCAGGCGGCCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154747-152582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOA010000011.1 Actinomadura sp. PM05-2 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 154746 29 100.0 32 ............................. CATTGGAAGGGCATTCTTTCCATACTCACCGG 154685 29 100.0 33 ............................. GTCTACAGCGAGGTTCCCGAGTGAGGATCGAGG 154623 29 100.0 32 ............................. GCGTGTGCCCGAGCCGCATAGTCACATAGGAA 154562 29 100.0 32 ............................. TACGCCTGGAATGTGCGGCTCACTGTACGGGC 154501 29 96.6 32 ............................A CCGGATTCGATGGGCTCACAGCGGTAGTAGTG 154440 29 100.0 32 ............................. GTGATGTGTACCTTGCGCTCATTCGCCGGTAG 154379 29 100.0 32 ............................. ACCGCGACGGAGACGGTCAACAACTCGGCGTC 154318 29 100.0 32 ............................. GACGATCCGGCGGGGATCGACATGGACGAGTT 154257 29 100.0 32 ............................. ACCGTCCATCCGGTGACGGTGGAGTCCCTGCC 154196 29 100.0 32 ............................. CCGTGATAGTGATCGGTCACGTCTTCTAGATC 154135 29 100.0 32 ............................. ACGCCAAGGCGCTGGCCGAGACGGCGCGGGCG 154074 29 100.0 32 ............................. TCCGCGTCACCGACCGGCCGATCTTCACCTGC 154013 29 100.0 32 ............................. GCGCCGATGGCCATCCAGAGCAGCGACTTGAG 153952 29 100.0 32 ............................. CCCCGGCGCCGTAGCGCCGGGGCTTCCCCATC 153891 29 100.0 32 ............................. GGCGGGGACGCTGCGGCGGCCCGCCCGAGGGC 153830 29 100.0 32 ............................. GGTTTGTTGCTGTCCCCTCTCCGGGGCAACCG 153769 29 100.0 32 ............................. TTCGACGAGACGCTCATGGAACCTCTCGACCC 153708 29 100.0 32 ............................. CCAACCCATATCGGCACGTGGGCGTACAACAA 153647 29 100.0 32 ............................. CCCTGCCCGGACTCCTGACCCCGCGCCCGCGA 153586 29 96.6 32 .....T....................... CCGTACGGGATGTCGCCGAACAGGTCGGCCTG 153525 29 100.0 32 ............................. CGGCGGTCGGAGTTGTCGAGGGTCGCGGCGAG 153464 29 100.0 32 ............................. CTCCGCCTGGTCTACCGCCTGCTGCACGAGTC 153403 29 100.0 32 ............................. AGGCGGGCACCGGAACGCTGCACTTCTCCCGC 153342 29 100.0 32 ............................. CCCGCTCGACACGAACGGCCCACCTCCCCGAT 153281 29 100.0 32 ............................. ACCCGCAAGGGCCGCCACGAGAAGACCTACAC 153220 29 96.6 32 ............................C TGGTACTGGCCGGTGAACGAGCCGATGCCGAG 153159 29 100.0 32 ............................. CGGGCGTGGAGCGCTACCGAGCGCGGATCGCG 153098 29 100.0 32 ............................. ATGATCGCGCCGCCGCCGAGGATGACCAGGTT 153037 29 96.6 32 ...T......................... CGACCACGCCCCCGCCCCCGTTCATCCCCGGG 152976 29 100.0 32 ............................. GTCTTGCGGTCCATCCCCTCGTCGCGCGTGAA 152915 29 100.0 32 ............................. GTCTTGCGGTCCATCCCCTCGTCGCGCGTGAA 152854 29 96.6 32 ..........T.................. ACGTCGAACGACCCCCACATCTCACAGGAGTA 152793 29 89.7 32 .............AG.........A.... GTGCTGGAGATCGCGGCATCGATGAAGGGCCA 152732 29 93.1 32 .............AG.............. CAGGTCGGACCGGGTCCAGGTGTCGCGGGCCT 152671 29 89.7 32 .............AG......A....... GCGACGGCCGCCAGACACAGGGCACCTCGTTC 152610 28 96.6 0 .............-............... | A [152595] ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.7 32 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : GGAACAATATGGGAACACCTCGCCGTGATCGCGTCCGAGATGACCTCTCGCACCCCTCCCCTGAAGGACTGATCACGTCTTCGGCAGGCAGTGCATACCGAACCCCGGACACCGCCATGCGATCTTCCCCGTCCCCGAACCGGTCCAGCGAACGATGCTCTTGCGAAGCGCCAGGCTCCTTCGGCCCTTCCGTCCGCTCCTTCGAGAAGGGCGATGATCCGTTCCGCGACGTTGCCCTGGTCGACCTTGCGAACGTGCGCGTACAGGTCGCGCGTGATGGTCGTCGTCGAGCGACCGAACTGATCGGAGACGATCTTGACGTCGAGGCCGGCTGCTTCCAGTGCCAAGGTCGGCCAGTCCACAGCCCCTGACCTCCCATGGTCAGCGACTGGTCTCTATCTGCCTCTCAACGATCTAAAGTGGCGACACGACCAGAACACGCCGCCCGCCAATATGGTCTCAAATTGGTAACGCACTCCTATAAGTGCAGGTCGCGAAGT # Right flank : CCTATCGAACCTGACGAGTTCGCCGGACCGGGGTATTTAGCTTGATAGCGCCGTTAAAAGAGTTCGGTCTCGTCGTCGATTGGTTCGGCTGGGTTGAGGGCGATGAGGGTGAGGCCGTCGAAGTCGATGGGGGTTCTGCGGCGTTCGCCGGCGGTGTGCAGGGTGAAGCCTTGTTCGTTGGCGTCGGGGTGGAGCAGGAGGGCCGCGCCGTCGCCTATTGATGCGGCTACGGCTGACCAGAGTTCCGTTCGCACGCGGGCTGAGAGGGTGCCGATGTAGAGGCCGGGCATGGGTTCGGTCATCCAGCGGGTGAGGGCGCCTCGTAGGTGGTCGGAGACGGCGGTGGTGGCGATGACGGTCATCGTGGCCATAGGTTATTCCCCGCCGTAGTTGGTGCCGCCGGCCAGGTTGCCAAAGTCGGGATCCCAGAGGTCGACGAGTTCCTCGCTGGCCTCTTCGGCGTCTTCTCGGCGGGTGCCGTCGTCGGGGTCCAGGAGGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //