Array 1 69471-67428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINY01000017.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0223 NODE_17_length_92158_cov_24.992198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69470 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 69409 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 69348 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 69287 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 69226 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 69165 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 69104 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 69043 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 68982 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 68921 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 68860 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 68799 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 68738 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 68677 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 68616 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 68555 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 68494 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 68433 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 68372 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 68311 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 68250 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 68189 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 68128 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 68067 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 68006 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 67945 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 67884 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 67823 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 67762 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 67701 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 67640 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 67579 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 67518 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 67457 29 96.6 0 A............................ | A [67430] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86744-85739 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINY01000017.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0223 NODE_17_length_92158_cov_24.992198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86743 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 86682 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 86621 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 86560 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 86499 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 86438 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 86377 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 86316 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 86255 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 86194 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 86133 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 86072 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 86011 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 85950 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 85889 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 85827 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 85766 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //