Array 1 305841-306638 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTT01000009.1 Listeria monocytogenes strain CFSAN002277 PROKKA_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 305841 29 100.0 35 ............................. ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT 305905 29 100.0 37 ............................. TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA 305971 29 100.0 34 ............................. ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC 306034 29 100.0 36 ............................. ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 306099 29 100.0 34 ............................. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 306162 29 100.0 35 ............................. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 306226 29 96.6 34 ..............T.............. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 306289 29 93.1 35 ..............T...A.......... GCGCTCTTATTCTTAGAATGCAATCCCGCGTCAAT 306353 29 93.1 36 ..............T...A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 306418 29 96.6 35 ..............T.............. TTATGACTTCATCACCTTCCATGTAACACTATTTT 306482 29 93.1 35 ..............T...........G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 306546 29 96.6 35 ......T...................... GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 306610 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 96.0 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCTACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCACCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 322238-322983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTT01000009.1 Listeria monocytogenes strain CFSAN002277 PROKKA_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 322238 29 100.0 35 ............................. TTCGCTAAAATCATAGCAAGCTCTAATTCAGCAGC 322302 29 100.0 38 ............................. AATGAAATCGATGGAATTAAGATTACAAGAGAAGATCC 322369 29 100.0 35 ............................. TTTGCTCTTACTACATGAATATTTGTACTACTCAT 322433 29 100.0 35 ............................. ACTGTCAGTATTCTTGTTGGGGCGGTTCTAGGGGC 322497 29 100.0 34 ............................. GTTATATCTGTTTTACTAACTTCTACATCTCCTT 322560 29 100.0 37 ............................. CACGAATCAATTCGATTAACATGATACGGACGTCCCG 322626 29 100.0 35 ............................. TTTGACATGTTGTAGGCGTTAAAGAACAGCTTGGC 322690 29 100.0 37 ............................. CATGCTACTAGTAATAGTGAAAACGATAGTACCATCA 322756 29 100.0 36 ............................. GGTGTTTAGCACGAATCAATCATCCAGGTTCACAAA 322821 29 100.0 37 ............................. GATGTATCAGATACTGAAATACTTCTGATTTGACAAG 322887 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGCATTCAATCC 322954 29 86.2 0 ...............C......CA....C | C [322976] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCGATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAGACCTGGACCTCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAATCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTTTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //