Array 1 6399-4911 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIA01000003.1 Listeria monocytogenes strain FSL L7-0661 NODE_3_length_500275_cov_41.601688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6398 36 100.0 30 .................................... TCGTTCATATCCTGACACGCTCGGGCTTCT 6332 36 100.0 30 .................................... TTTATAACCACCAGTTGCCTTCGTTTGTTC 6266 36 100.0 30 .................................... TTTCATCCTTTTTCATGCTTTTGTAAAAGT 6200 36 100.0 30 .................................... GTGTCACTGCACCAATGACCTCGTGTTCCG 6134 36 100.0 30 .................................... TCGAATTTACGAGCATACTCCTTTGAGCTC 6068 36 100.0 30 .................................... ATTTGAGCGACAGAGAATTGATATACGAGA 6002 36 100.0 30 .................................... CAGATACCCTGTGTATATCCTGTATAATCA 5936 36 100.0 30 .................................... TGAAAGTAATGAATTATTCAGAACCAAGAA 5870 36 100.0 30 .................................... ATCCTTGACTTTATCCTTCGCTTTGAGAAT 5804 36 100.0 30 .................................... TGTCGCCATTCCCGATTGGAGGTATTTCGT 5738 36 100.0 30 .................................... TCCCGTAATGGTCTTAACTTACAATTTTGA 5672 36 100.0 30 .................................... CGAAGTATAAAGGAATGGTCTACCCTTTAA 5606 36 100.0 30 .................................... TGGAATGATTGATAAAGTAGCGAAATTTAT 5540 36 100.0 30 .................................... TATCATAGTAGCATATAAGTTGTGCCCATT 5474 36 100.0 30 .................................... AAACTAAAATAAATTTCGGCTTAAGTGTTT 5408 36 100.0 30 .................................... TGATTATTGTCCGCAATGTTTCGAGTGCGA 5342 36 100.0 30 .................................... CTGTTTGGATTGGTGTTTTGTGTCGCAGTA 5276 36 100.0 30 .................................... AGAAAAAGTGAAGAAAATAAAACATTTACA 5210 36 100.0 30 .................................... CATTTTTAAAACCTCGCCCACGGAACAATA 5144 36 100.0 30 .................................... AGTTTCTAGTCTGGAAGCCACACTGGAAGG 5078 36 100.0 30 .................................... ATCGATTCGTTTATTATCCACAAAAGCATT 5012 36 100.0 30 .................................... TGCACGTGTTAAGGGAGTCATGTTCACGCA 4946 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCTTGCTCAACCACCCAAAAACAAACACAAACCACGGAAGCTATCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTTGCCCACAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTGCCTTGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //