Array 1 100816-100299 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMR01000004.1 Cronobacter malonaticus strain cro745W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100815 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 100754 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 100693 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 100632 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 100571 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 100510 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 100449 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 100388 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 100327 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129022-127471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMR01000004.1 Cronobacter malonaticus strain cro745W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129021 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 128960 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 128899 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 128838 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 128777 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 128716 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 128655 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 128594 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 128533 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 128472 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 128411 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 128350 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 128289 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 128228 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 128167 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 128106 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 128045 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 127984 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 127924 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 127863 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 127802 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 127741 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 127680 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 127619 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 127558 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 127497 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //