Array 1 240008-238514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQRT010000005.1 Salmonella enterica subsp. diarizonae strain 19CR6061 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 240007 29 100.0 32 ............................. CGCGCCACGTGGCAACGTCATTAGCACAGAAG 239946 29 100.0 32 ............................. TGTCATCTGTCGTGACAATCATGCTGGAATTG 239885 29 100.0 32 ............................. TGTCATCTGTCGTGACAATCATGCTGGAATTG 239824 29 100.0 32 ............................. AAAATGCTGATTGCCTGACCCAATCGAGTCCC 239763 29 100.0 32 ............................. GCATCTCAACACACTACGAAATCAATGTTGCA 239702 29 100.0 32 ............................. CGGTAGCTGCATTAGCTATTGGGATTGGTGTT 239641 29 100.0 32 ............................. GCGTCAATCATGTCTATATGCCACTGACCACC 239580 29 100.0 32 ............................. GGGTTACCGCCAAAAATTTTTCACTCCATTAA 239519 29 100.0 32 ............................. CGTGAGGATTTTTGCGCCTTCATCCTGACCCA 239458 29 100.0 33 ............................. TTCAGCAACTTCTCTTCATCACGTTGAGGCTGC 239396 29 100.0 32 ............................. CACTGACGCAGCAACAGGCGGAAATCTATGAT 239335 29 100.0 32 ............................. CCACTCGCGAGCGGGCACGTCAGGCGGAAGAA 239274 29 100.0 32 ............................. CTGATGGACTTCACCGCATATTTCACCCAACC 239213 29 100.0 32 ............................. GTGAATTCAACGGTAACGTTACCCGTTGCGGG 239152 29 100.0 32 ............................. GATAAATCATAAATAACCTTCTCTTTTCCAGA 239091 29 100.0 32 ............................. ATTTCCAGGACTTCGGCAAGGGCCAGCCCTTC 239030 29 100.0 32 ............................. CAACATGCTGGCGGCTTTTGAGATGCGCCTTG 238969 29 96.6 32 ............T................ CAGGGCTACGAAAACCTTGTATCGACGATTAA 238908 29 100.0 32 ............................. GCCTAACGCCAACGGAAGAGGATATGGAGGGA 238847 29 100.0 32 ............................. AAAACCAGGACGACGATCTGTTTGACTGCTTT 238786 29 100.0 32 ............................. GTGGACGACCTTGAGCATTGATTTAGGTTACG 238725 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 238664 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 238603 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 238542 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //