Array 1 3-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFH01000166.1 Escherichia coli strain NOR4_81_E10 NODE_1363_length_155645_cov_58.005077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 63 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 123 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 183 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 244 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 304 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 364 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 424 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 484 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 544 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTG # Right flank : ANNNNNNNNNNGTTCACTGCCGTACAGGCAGTATTCACACTACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9668-9815 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFH01000166.1 Escherichia coli strain NOR4_81_E10 NODE_1363_length_155645_cov_58.005077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9668 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 9728 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 9788 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : AAGTTGGAGTATGCGCGTGGGCTTAAAGATCGCGTTCACTGCCGTACAGGCAGCTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCTGTACAGAAAGATCAACCATAATATTGTTCACTGCCGTACAGGCAGCTTAGAAACGGGGAATGACACGCCGTTAATAGTGGAACTTGTTCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNCAAAATAATGCGTCGCTTTCTGACATTTTGTTCACTGCCGTACAGGCAGCTTAGAAAAATTCGTGCTGGCGCGGGTCGTGGCATCACGTGTTCACTGCCGTACAGGCAGCTTAGAAATGACGTCGCGTGAATATGACGCCGTTGTTTTTGTTCACTGCCGTACAGGCAGCTTAGAAAGCTTGGGGAGTATTGGGAATCGCTCGGCGGGAGTTCACTGCCGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 9995-10573 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFH01000166.1 Escherichia coli strain NOR4_81_E10 NODE_1363_length_155645_cov_58.005077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 9995 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 10055 28 100.0 39 ............................ NNNNNNNNNNCAAAATAATGCGTCGCTTTCTGACATTTT 10122 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 10182 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 10242 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 10302 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 10362 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 10422 28 89.3 36 .........................NNN NNNNNNNGAGGCGCTCACACTCACGCGGAGTGAGAC 10486 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 10546 27 92.9 0 .......................-C... | T [10566] ========== ====== ====== ====== ============================ ======================================= ================== 10 28 98.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAGTTCACTGCCGTACAGGCAGCTTAGAAAAGCAAAAACCGGATATAGACAATCTCACTAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGCGCACGGCGTGGCGACAGAGAGCACGCCCGCGTTCACTGCCGTACAGGCAGCTTAGAAAAGTTGGAGTATGCGCGTGGGCTTAAAGATCGCGTTCACTGCCGTACAGGCAGCTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCTGTACAGAAAGATCAACCATAATATT # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //