Array 1 276-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATWX01000023.1 Bifidobacterium longum AGR2137 G629DRAFT_scaffold00023.23_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275 29 100.0 32 ............................. GCCTGCTGCTGCCCCCCAAACTCCTGCCCGAT 214 29 100.0 32 ............................. TACGCGGTCGTCGTTTGCATTCATTGCTCGGG 153 29 100.0 32 ............................. ATGGTGGCACCTACCGGCACGGCGGCCAAGAC 92 29 100.0 32 ............................. GAACGGCTCATCTCCGATGAGGTGGCGCAAGC 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGTTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : GAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108783-108552 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATWX01000005.1 Bifidobacterium longum AGR2137 G629DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 108782 33 97.0 32 ................................T ATTGGTTGTTTGCCAGCGAGAGGAAGTCGCTG 108717 33 100.0 33 ................................. CGTCCGGGGTCGCCTGCGACCAGAGCCGTATCT 108651 33 100.0 34 ................................. AGCTCGGCTACCGGTCATTGCGGGCCACGCGGCC 108584 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATG # Left flank : TCCGACGCCGACGTTCCAGCTTAAGCTGGCGATGTAGTTTGCCCCGCACGCGCGGGGATGATCCGGCGCTTGCGGATACCGTAATCCAGCTCAACAAGTTTGCCCCGCACGCGCGGGGATGATCCGACGCCGACGTTCCAGCTTAAGCTGGCGATGTAGTTTGCCCCGCACGCGCGGGGATGATCCGGCGCTTGCGGATACCGTAATCCAGCTCAACAAGTTTGCCCCGCACGCGCGGGGATGATCCGACGCCGACGTTCCAGCTTAAGCTGGCGATGTAGTTTGCCCCGCACGCGCGGGGATGATCCGGCGCTTGCGGATACCGTAATCCAGCTCAACAAGTTTGCCCCGCACGCGCGGGGATGATCCGCCGCGCGTGCTGCGGAACGTGACCACTCCCGGGTTTGCCCCGCACGCGCGGGGATGATCCGGAGCGTGACGAGAAGGCCACGGAGTCGTGGAAGTTTAGGAATCTCGCCTCCACGTCGCTCAATGCGCTC # Right flank : GGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 109796-108852 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATWX01000005.1 Bifidobacterium longum AGR2137 G629DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109795 29 100.0 32 ............................. GACACCGCGCGATTGTACGCGCTTCTGAGCCG 109734 29 96.6 32 ..............T.............. GCCCACCGTTCCGCGATTTGACGCTGGTATCT 109673 29 100.0 32 ............................. GACACGGAAATCAAAAACGATTTGACAAACAC 109612 29 100.0 32 ............................. CCGAGTGGACCGGCTCGACCTCAAGGGCTTCC 109551 29 100.0 32 ............................. ATCGCGCGCGCGAAGAAACTGCTCGAGTCGGA 109490 29 100.0 32 ............................. TCGGCCTGCGTGTTGGCGATGTCGATGCCGCA 109429 29 100.0 32 ............................. GCATTGCTCAAGGCCCTGCGTTCGACCGCTGG 109368 29 100.0 32 ............................. GACGCGACATTATTCACGACAACGCTAGCGGT 109307 29 100.0 32 ............................. ACGCCGACGTTCCAGCTTAAGCTGGCGATGTA 109246 29 100.0 32 ............................. GCGCTTGCGGATACCGTAATCCAGCTCAACAA 109185 29 100.0 32 ............................. ACGCCGACGTTCCAGCTTAAGCTGGCGATGTA 109124 29 100.0 32 ............................. GCGCTTGCGGATACCGTAATCCAGCTCAACAA 109063 29 100.0 32 ............................. ACGCCGACGTTCCAGCTTAAGCTGGCGATGTA 109002 29 100.0 32 ............................. GCGCTTGCGGATACCGTAATCCAGCTCAACAA 108941 29 100.0 32 ............................. CCGCGCGTGCTGCGGAACGTGACCACTCCCGG 108880 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTA # Right flank : GAGCGTGACGAGAAGGCCACGGAGTCGTGGAAGTTTAGGAATCTCGCCTCCACGTCGCTCAATGCGCTCGTCGCACCCCACTGGGGTGCGTGGATTGAAATTATTGGTTGTTTGCCAGCGAGAGGAAGTCGCTGGTCGCACCCCACTGGGGTGCGTGGATTGAAATGCGTCCGGGGTCGCCTGCGACCAGAGCCGTATCTGTCGCACCCCACTGGGGTGCGTGGATTGAAATGAGCTCGGCTACCGGTCATTGCGGGCCACGCGGCCGTCGCACCCCACTGGGGTGCGTGGATTGAAATCGGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //