Array 1 10172-11054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNMX01000011.1 Escherichia coli 3-475-03_S4_C2 e347503S4C2.contig.10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10172 29 100.0 32 ............................. CCAGCACAACATAATAGCGGTGAGTTATTCAT 10233 29 100.0 32 ............................. TTGCGAATGCTCTCGATCATTTCGTTACTATC 10294 29 96.6 32 ............................T TTCCCGCAGTTTTGCTGAACTGGCAACCCAGC 10355 29 100.0 32 ............................. AATAAATAATAATCCAGTAGCCCCATGTATTA 10416 29 100.0 32 ............................. GTAATAAAAAATATTCTATTTCTGCTGAATCA 10477 29 100.0 32 ............................. CTTGCGAGCAAAAGATCCAGGCCGAGAAAGAC 10538 29 100.0 32 ............................. CGATAACCGCGTCAGTATTGGACAGGATATCA 10599 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10660 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10721 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10782 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10843 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10904 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 10965 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 11026 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTGCACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 583-1465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNMX01000074.1 Escherichia coli 3-475-03_S4_C2 e347503S4C2.contig.73_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 583 29 100.0 32 ............................. TCGCTCCGGCGGGCTGACGCTCAACAAACCGT 644 29 100.0 32 ............................. CGTGACGCTGGTGGGCGTTTTGTTTTCCTGCT 705 29 100.0 32 ............................. CCCTGTATCGATGCGGAGCGGCAGCGCTGGGA 766 29 100.0 32 ............................. ATCGGTAACTACGGCACAAAACAGGAGCACAG 827 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 888 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 949 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 1010 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC 1071 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 1132 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1193 29 96.6 32 ..A.......................... ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1254 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1315 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1376 29 96.6 32 ....C........................ GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1437 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAATAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //