Array 1 17201-15717 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCF01000014.1 Neisseria lactamica strain M17105 M17105_HUY3124A92_cleaned_ctg_7478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 17200 32 100.0 34 ................................ TACGGTCAGCAGGCGGCGGTTTTTGTGTTTGTTC 17134 32 100.0 35 ................................ TTGCAATAGCTCTTAATATGAGCTATTATACACAT 17067 32 100.0 33 ................................ CGCCCCCAAAGTCCATTTGGTGACAACCAAGTC 17002 32 100.0 34 ................................ TATATTGCGATTAAATTTAGCTGCATGCAATGAA 16936 32 100.0 33 ................................ GTTGATATCTACCAGAACTGAAGACGCATTGCG 16871 32 100.0 35 ................................ CGCCTCCAAAGTCCATTTGGTGATAACCAAGTCAT 16804 32 100.0 34 ................................ CTTGATACCTAAATTAGGTAAATCGGGATCGCGG 16738 32 100.0 33 ................................ CTGTATATCAAAATGATTACAAAAATGGGAAAC 16673 32 100.0 34 ................................ TGATTAAGAATAAGGCGGACGCAAACCAAATGCC 16607 32 100.0 35 ................................ CGAAATTCCTTCTAATATTAATCAGGTAATCAAGC 16540 32 100.0 35 ................................ CGGGTCAAGGTAGCGTTGCAACGTGTACATTTCTG 16473 32 100.0 34 ................................ AAAGGTGGTGATATGGACAAATTGGCAGGTAAAT 16407 32 100.0 35 ................................ TATATATTGTAACAGCTTGACCCATTTTGCCAACG 16340 32 100.0 34 ................................ CCCCTCAACGAACCGAAAACGACAAAAGCCGACA 16274 32 100.0 34 ................................ ACATTAAAATAACAATAATTAAAAATACATCCTA 16208 32 100.0 34 ................................ GATAAAACATTTTCTGTATTTTGATTTGGAGTAA 16142 32 100.0 33 ................................ CGCCCAGCATCACAAGATTCAATTTGTGCAAAT 16077 32 100.0 34 ................................ ACAGCCGCGCCGTTACTTGTTTTCAGGACATGAA 16011 32 100.0 34 ................................ AAACGCGGCAAGGTCAAGATGATGACGCTGTCCG 15945 32 100.0 34 ................................ ATCATAAAACAAAATATTAGTGATGTATCCACCA 15879 32 100.0 34 ................................ AGACGGTATTTTTGACGGCAAATTGATTCGTCAG 15813 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 15748 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 23 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGTTGGCAGCCTGCGGCGGTAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGAGCAAACCCCGGCAGGTTTCAAACCGTCCAATCCTGCGGATAAGCCCGCTCCGGCTCCTGCCAAACCTTCTAAAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGGCGGAATACTGCTTTTCATCGTGAAGATGGCACGGCAATTCCCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 143809-143377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCF01000001.1 Neisseria lactamica strain M17105 M17105_HUY3124A92_cleaned_ctg_7452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 143808 36 100.0 30 .................................... TCACGGAGACATGGAAATACCTTTGGATAT 143742 36 100.0 30 .................................... GCCCTAGCGTATTTGGATTGGCTAGCGTCA 143676 36 100.0 30 .................................... GGAACTTTATGACATAGATTCAGGCGCGAG 143610 36 100.0 30 .................................... CTGCCTGCCGGAATCAAGCACGGTTATAGT 143544 36 100.0 30 .................................... GATGATTCTGACAATCAGCATTTTCAGGAG 143478 36 100.0 30 .................................... CCCGATTGATGGCGTTCGGTTGGAATTGCA 143412 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AGATTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATAAGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCTAGCATCAATCGTAACAGTCAATTGCAAATTGCCTACCTTAATAGAGATTTGCATTTTGATTTTTCCTGTAAGTTTCAAACTTGGCAGGAATGCAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGCTCTTTAAGTTTCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //