Array 1 2180015-2183964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576787.1 Propionibacterium freudenreichii isolate PFRJS12 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2180015 36 100.0 37 .................................... CCTCGTGAAAATCGCAGCCCTGCTCCACATGCCCCCC 2180088 36 100.0 37 .................................... GGCGAGGTCGGGCTGCAGTACGGGAACCAGCGCAAGC 2180161 36 100.0 39 .................................... AGGTCACAGGCGAACCTGCGCACGGTGATTGACTTCCAG 2180236 36 100.0 37 .................................... ATCTCGACGTGGTCGAAAGTCGGATTGTGGCCTGACC 2180309 36 100.0 38 .................................... TGTTTCCAGCGGGATTGCAGTGTGCAATTTCATGACCC 2180383 36 100.0 38 .................................... GAAGCTGGGCGGCACGCTGTCTGGCTGGGGCAGCTCGA 2180457 36 100.0 36 .................................... AGCCGGTCGACATTGCAACCAACGTTCTACGAGGCG 2180529 36 100.0 38 .................................... ACACGATCCCCGGGGCGATGACTCCCATGCCCGCTACG 2180603 36 100.0 36 .................................... GGCGGCCCGTTCAACATTCCGGGGATTGCCTCGCTG 2180675 36 100.0 35 .................................... GCGGGTCGCGACAACGTGGCCGACGATGACCCCAG 2180746 36 100.0 38 .................................... TGTTCTTACAGAAGTTGGATACACGCTAAAGTTCTAGG 2180820 36 100.0 40 .................................... TCGAAGTTGGACGAGGACAATCATCGGGCAATTCTGGGAA 2180896 36 100.0 40 .................................... TTGCACACCTAACATGGTTGTGATGGCGGACAATCAGCCT 2180972 36 100.0 35 .................................... TCACCCCCGGTTCGCCTTAAGCAGCCGCCACCGCT 2181043 36 100.0 40 .................................... ACCATGACTTTCTCGGATGCCTGAAGTGGCGCACCTTCGG 2181119 36 100.0 35 .................................... TGCCGCTGGTCCACCATCACGTCGTGGCCGAGCAT 2181190 36 100.0 37 .................................... TGGTAATACATTAGGACTGTGGCCTGTAGTTTTACAG 2181263 36 100.0 36 .................................... AGCACAAGTGCCCGGCCTGCCATTACGACACGCCGG 2181335 36 100.0 37 .................................... GATCCGATTCCCGCAGCGCCGCTGATCGGTGTCGCCA 2181408 36 100.0 36 .................................... TTCATTGACAGAGTTCTCCATTGCATCAACATCCTT 2181480 36 100.0 37 .................................... AGTCAGGATGCATGGGTGCGTAGCCACATGGATGAAA 2181553 36 100.0 35 .................................... AATTTGTGGGGGTTCCCGGTGATTGTGACTACCGC 2181624 36 100.0 36 .................................... GAACGGATCGATCGACTTCAACCCGAAATTCTTCAA 2181696 36 100.0 36 .................................... CACAACCCGCCCTACTGGCGCACCCGGCAGTCAGCT 2181768 36 100.0 40 .................................... CCTACCAGCCCAATGTATACGGACCGATCGGATGGTCATC 2181844 36 100.0 37 .................................... TCGTCGGGCGGCATGGTGCGCGGCGACCGCACCCAAA 2181917 36 100.0 35 .................................... ATTAGTAAGGCGCCTACGACCGTGGATGTTTCCGT 2181988 36 100.0 34 .................................... CCCGAGGCGAGTTCCCTCACGTTACTGAGCGTGG 2182058 36 100.0 41 .................................... TCATGAGAGTTGAGCTCTAGCGGTACCCGTAACTTCAGAAG 2182135 36 100.0 35 .................................... CCGGCAGCGGTGGTGATGTCGTCCACATTGGCGGT 2182206 36 100.0 34 .................................... GTCGAAGGAATCGAGCAGCGCTCGGCATCCGACG 2182276 36 100.0 37 .................................... AAAAAAAGCTGCATCCCAGCTGCCAACCTCCCCTGGG 2182349 36 100.0 34 .................................... ATTCCACATACCCGTCAGGCAGCTTGGAGATGCG 2182419 36 100.0 40 .................................... ACCCGCGTCACCCTGCTCGAAGACCCCGACGAACCGGACC 2182495 36 100.0 35 .................................... CTGTCGACCTCGACGGTGGAAACCGACTGCACAGG 2182566 36 100.0 36 .................................... CAGGGCGTGGTGAAGCTGTTCTGGCAGAATCCTGCC 2182638 36 100.0 35 .................................... TTCGGGAAGCTCACAGAATCATGGCGCACGGTGGA 2182709 36 97.2 34 ...T................................ GTCGAATTCAACATTTCTGCCAAGCTCCAGGGTG 2182779 36 97.2 39 ....................A............... TTACCGGTCTTACCCTCTAGCGCCGTGGACGACCATACC 2182854 36 100.0 36 .................................... ACCCACTCGTTGTAAAATCCACCGACCTCGGCGGAG 2182926 36 100.0 25 .................................... GGCGCCGCTCGGGACGCTGCTCGGG Deletion [2182987] 2182987 36 100.0 38 .................................... ACTCCTTGTTGTTGGCAGTTCGTTTGGTTGGCCCTCGC 2183061 36 100.0 37 .................................... AAGTGGCCGGCGGGCAGGGTCCAGGCGGGCAGGTCCA 2183134 36 94.4 36 ..........TC........................ GGCGGCCGTTCCGATTGGTTTCCGCCGTTCGATAAG 2183206 36 100.0 36 .................................... CCAAAAGGGCAACATACAGTACATCCGCAACGAGGC 2183278 36 100.0 36 .................................... TCCGTCAGGTGCTTGAGGGTATGGGGCTGACGTTCT 2183350 36 100.0 36 .................................... GTGCGCATCAGATCACACGCCAGCAGTGCCGAGGGC 2183422 36 100.0 34 .................................... TTCGCGTCGGCGACCAGCGATCTGGCTGGTCCGG 2183492 36 100.0 40 .................................... GGATTCACCGAGGTGGCGTTGCAGTCGCGGGGTGCCCCGG 2183568 36 100.0 35 .................................... CACGATGCGCCGTGGGCGACACGACGCCTTTGGGG 2183639 36 100.0 36 .................................... CAGGGCGTGGTGAAGCTGTTCTGGCAGAATCCTGCC 2183711 36 100.0 38 .................................... CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT 2183785 36 97.2 37 ......T............................. GTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG 2183858 36 97.2 35 ...................................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 2183929 36 97.2 0 ...................A................ | ========== ====== ====== ====== ==================================== ========================================= ================== 55 36 99.6 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGATATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : CTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //