Array 1 41078-46479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIX01000018.1 Roseomonas gilardii strain DE0006 NODE_18_length_61155_cov_18.842562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41078 29 100.0 32 ............................. GTGCACCGCTGGTGGTGTGGCGTGGTGGATGA 41139 29 100.0 32 ............................. GTCCGGCGCTGGGGCTCCTCGCCGCGACGGGT 41200 29 100.0 32 ............................. TGATCGAGTACCAGTGGGCCGAGCGCGTCTCG 41261 29 100.0 32 ............................. ATCAGCCCGCCGAGCGCGTACGGCACGGCCAA 41322 29 100.0 32 ............................. TACGGTGCCACCCTGGAGGGCCTGTCCCTGCG 41383 29 100.0 32 ............................. TCTTTTCAAATGGCTTGTAATCGGGGTGCATG 41444 29 100.0 32 ............................. GCAGAGAAGACCCCGGACGGCTCCCCCATCGA 41505 29 100.0 32 ............................. GCCCAGGCTCAGGTGCAGGCGCAGCAGGCCAA 41566 29 100.0 32 ............................. GCCTGCGGGCTCATATCGACGCCTCCAGCTCG 41627 29 100.0 33 ............................. TACGGCTGCGACCTCACCGGCCTCTCCCTCCGC 41689 29 100.0 32 ............................. GTTGAGAAGGAAAGCGCAACCTTCGCGCAGGC 41750 29 96.6 32 ............................T CATCGAAATCACGGATGAAACGCGTATACAGC 41811 29 100.0 32 ............................. GCTACCTCACGCGGCCTCGTGCGCCCGCACCG 41872 29 100.0 32 ............................. GCGCTGAACGGCAAGGTATTCCGATGGGACCA 41933 29 100.0 32 ............................. CGCCCCGGTAGGCAGAGCGCCCGCAAGGACCG 41994 29 100.0 32 ............................. AGCCAGTCCGACGTGCTGACCGGCTGGCTCGA 42055 29 100.0 32 ............................. CTGGTGAACGGCAAGGTCACCGCACTGGCCGC 42116 29 100.0 32 ............................. ATCGGGCAAGCCGGTCTGCGGGCCGGTGTAGG 42177 29 100.0 32 ............................. TCATCGGCAAACGCGTGCGGTGCGTCTGGTTC 42238 29 100.0 32 ............................. TTGCAGCGTTGGCCGCGACGGTCCAAATACTG 42299 29 100.0 32 ............................. CGGGTTCCCCTGCGGGAACTTCGAGAGGTATC 42360 29 100.0 32 ............................. ACCTGTCGGACAAGATCCGGTCGGGGCAGGCC 42421 29 100.0 32 ............................. CCGACGCCGCGCTCCCGAACGCCACCTATGCG 42482 29 100.0 33 ............................. TCGGAAGGGGTCAAGACGGAAGCCAAGACCGGC 42544 29 100.0 32 ............................. GGGAGCTTCGTTGGCGTCATGCTGCCGGACAT 42605 29 100.0 32 ............................. GGGTGGACGTGACCATGACGGCGAAGGGCAAG 42666 29 100.0 32 ............................. ACCCTTCCTTTCCTACCAGGGCTAGGGATCGT 42727 29 100.0 32 ............................. ACCAAAGCATGCGTCATGGATCTGGGCATCGC 42788 29 100.0 32 ............................. CCGATGGGAACCTGCACCTGGGCTTGCCGCAC 42849 29 100.0 32 ............................. TTCACGCGCGCCATGATTACCGCATCCACTAC 42910 29 100.0 32 ............................. GAGCGGCAGTTCGTCAACGCGTATCAGCAGGA 42971 29 100.0 32 ............................. CTGATCCACGATGAGGCGGTCTTCCCGCGTCA 43032 29 100.0 32 ............................. GCCGATTAACGGGAACAAGCCGCAGCACGGGC 43093 29 100.0 32 ............................. GTAATTCCACGCGTCAAGCTGATAGGGCCTTG 43154 29 100.0 32 ............................. CCGCGAGGGATGACAGCGCCGAGGCCGGTGTC 43215 29 100.0 32 ............................. CTGCCTTTCCGGGCTGGCATGACGCGCGAGAG 43276 29 100.0 32 ............................. GTGGTGTTCCCGAAGGCCACACCGGCCGCGCC 43337 29 100.0 32 ............................. GCCGCCACCGCAACCCCGGCTCCGAACGATCA 43398 29 100.0 32 ............................. GCCCGATGACGGTCACCGGCGAGGCGCGCGTG 43459 29 100.0 32 ............................. CGGCGGGGCGGTGGCATGGAGCGATCTGGAGG 43520 29 100.0 32 ............................. GACGGGTCGGCGTTGGCGCGCCTTCCCGTCCG 43581 29 100.0 32 ............................. GAGCGGGGCCATGAAGATGCGTGCTCTCGATA 43642 29 100.0 32 ............................. ATCGAGACGGTCACCGGCACCGCGCCGACGGG 43703 29 100.0 32 ............................. CGCAACGGCACCACCCTGGCCGGTGTGACCAA 43764 29 100.0 32 ............................. CTGCGGACCCGGCCGCTGCGGACGCTGCCCCG 43825 29 100.0 32 ............................. GCTTCACGGGCGAGAACGAGCCATGCTCCAGC 43886 29 100.0 32 ............................. TGGTGTCCCCTGGTGGCGCGCTGGTGGACAAG 43947 29 100.0 32 ............................. CGGCTCACAGCACGTACCACACCTGGGCCACA 44008 29 100.0 32 ............................. CCCGAGTTCCTGCGCTCTGCCATGCTGGACGA 44069 29 100.0 32 ............................. TCCTCCCTGGTTCCGTCGCCTATTGGCTTTCC 44130 29 100.0 32 ............................. GATCAGGTGGTGGAGGACGTCGTAGCCCTCCT 44191 29 100.0 32 ............................. AGGCCGCCGAAGTTGTCGAAGTCCTGCCCTGT 44252 29 100.0 32 ............................. CCCCCCGCTTACGGCCCCGACCGACCGCGCGA 44313 29 96.6 32 ............................A GGCCAAGACCACCCGACCGCTGATGCGCCCGG 44374 29 100.0 33 ............................. CCTGCCAGGAGCCATCGGAGAGGAACCGCAGCA 44436 29 100.0 32 ............................. TCCCGGCAGAAGCTCACGGCCGGCTATGGTGG 44497 29 100.0 32 ............................. GAAAAGCTTCAGCGCCTCCACCAGCGCCGCAT 44558 29 100.0 32 ............................. TCTGGCCGCAGCTTCCGGCAAGCCTGCGGTTG 44619 29 100.0 32 ............................. ACTACTTCGAGGACCAAGACGCATTCGGGCAG 44680 29 100.0 32 ............................. CCGACCGACTGGCAGACGGCGCTGTAGTACTG 44741 29 100.0 32 ............................. CTCGGCATCAGCCACATAGCCCGTCTCGCTGG 44802 29 100.0 32 ............................. TCGTAGGGCTATGTTGAACATAGGCCGTGCGC 44863 29 100.0 32 ............................. TGGTGTCCCCTGGTGGCGCGCTGGTGGACAAG 44924 29 100.0 32 ............................. CAGATCCGGGTGCTGGGCGAGAACGGCAAGCC 44985 29 96.6 32 ............................A CCGCATCCACCCGGTCCAGGGTCAGCGGATAG 45046 29 100.0 32 ............................. GAGCGGGCGGACGCGGAGGTTCAGGTCAAGCG 45107 29 100.0 32 ............................. TCCACCCGGTCCCAGTTCAGGTCCAGGATTGC 45168 29 100.0 32 ............................. ATTTCCATCACGATGCGTTCCAGGCACTCCAG 45229 29 96.6 32 ............................C GGTGACCAACTATCCCGAGTACCCCGCCGTCG 45290 29 100.0 32 ............................. TATCCCGGCATCCTCGCGAGCCAGGGCAGCCT 45351 29 100.0 32 ............................. GCGCAGAACGATATCCAGATCGCGCAGGTCAA 45412 29 100.0 33 ............................. TCGGTCCAGCAGGTTCAGCAGCCATTCCAGCAG 45474 29 100.0 32 ............................. TTTGGCCGAGATTTGCCATTGGTTTCAGTCTT 45535 29 100.0 32 ............................. CTCGGCCACGCCGTGCTGTCTCGGCAGGCGGG 45596 29 100.0 32 ............................. GAGTAGGAACTCAAAACGGGTTCTTACTCCTC 45657 29 100.0 32 ............................. ACAGCAGGGCCGCGAGAGCGGGGCCGTGCTCC 45718 29 96.6 32 ...............T............. ACCGGGGGTTCCTGGCGGTCGTGTTGCCGCTG 45779 29 100.0 32 ............................. ACGGTGGCAGCCGTGCAGCGGCAGATCCTCAA 45840 29 100.0 32 ............................. TTCATGTCCTTCGCCTACAAGCCCAAGGACGA 45901 29 100.0 32 ............................. TCGGGCGTCTCGGCCTTGAACTCGTTGGCCCT 45962 29 100.0 32 ............................. GGCACGTTCTACGGCATCGTGCGGGCGCTGAA 46023 29 100.0 32 ............................. AGGCTTGATCGCCTCAAGGCATCCGCGAACGA 46084 29 100.0 32 ............................. ACGCAGAGTGACATCGCCGCAGATCAGGCGAA 46145 29 100.0 32 ............................. CCCGCCACCTGCCGAAGTGCGCGCGCTAAGGG 46206 29 100.0 32 ............................. GCCGAGTTAGCGCCCGAAAATCTCGCTCATGG 46267 29 96.6 32 ............................T GGCGCAGCCCGAAATCCCGCCGGGCCTCGATG 46328 29 100.0 33 ............................. CGCGCGCTGGTCCTGCGGCGTGAGGTCTCCGAC 46390 29 100.0 32 ............................. GTGACGGAGAGGCCGACCGCGTGAACCTGACC 46451 29 93.1 0 T...........................A | ========== ====== ====== ====== ============================= ================================= ================== 89 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : GTGCTGGGAAAGCTGATCCCTCTCATCGAAGAGGTTCTTACAGCCGGGGGCCTGCCACTGCCGGCCGCACCCGAGGAAGCGATGCCCGTGGCCTTCGAAGCTCTGCCGGGTTTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCACGCCTGCGGGGAAGACTGGCGGTCTGGCTCCTGGAGATCCGGGCCGGGGTCTATGTCGGCACCTATGGCCGACGCGTGCGGGAGATGATCTGGGAGCAGGTGCAGGCGGGGATCGAGGAGGGCAACGCCGTCATGGCCTGGGCCGCCCCAACCGATGCTGGTTTCCTGTTCGAGACCTGTGGGCGAAATCGGCGTGTGCCGACCGACATAGACGGGTTCCGGCTGGTCGCCTTTGGCCCGGAAGCGGCATACTCTGCCCTGCCACCCATGTCTGACCAGAACAGACGTTCTAGGCGGTAGCCTCTTTCACAGCAGAATAAGATCACCGAAACAGTCACTTACAGGAAGA # Right flank : AAGGGCAGCGGAGCGCATCGCGGCACTCAAAGCGTCTTCCCCCGCGCGAGCGTGAGGATAAATTGTAGCCGTCCGAAAACCTGAAGACCGTTTGGCCTCCTTACAGATGCTCGATGGACGCCAGCGGCGGAACTCCGGCGCGCAGCCAGTCGCAAGCCATGTCAGGATGGGCGATGACGAGGGCAGCCCGACCGGGGCGCGGGTAAAGCCGGACCCGGGCACCATCTCCCACCTTGCGGATGTCGTCCGCCTCGAAGTCCGCCATATTGGCGGTGACCAGCAGGTCGGCCTCGCCGGCAACGGCCACCTCCAGCACGTGCCGGTCCTCCTCGTCGCGAAGGGGGTACACACCTCCGCCTATGAGCGCATGCGGGTGGTCTCCAGCTGGCCCCAACGAAGCCAGGCTGCCGATCGCACGCACTAACGTCTCCGCCGCGTCCGCCTCGACCCGGAACTCGCGCACCAGGACCAATGCCAGACGGTCCAGCATCCCCAGCGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //