Array 1 56240-54884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBE010000019.1 Streptococcus thermophilus strain FDL19 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56239 36 100.0 30 .................................... CGCTTCATCAGGAGTTATGCCGCTTTACTT 56173 36 100.0 30 .................................... CTATGGGAGTTTCAAAGATTATCAAAGCAC 56107 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 56041 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 55975 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 55909 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 55843 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 55777 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 55711 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 55645 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 55579 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 55513 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 55447 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 55381 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 55315 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 55249 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 55183 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 55117 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 55051 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 54985 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 54919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 129892-132894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBE010000007.1 Streptococcus thermophilus strain FDL19 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 129892 36 100.0 30 .................................... AAATCTATGGTACTGGTCAAAATAGGGAAA 129958 36 100.0 29 .................................... TAAATTGATTATTATATATACATAAAGTG 130023 36 100.0 30 .................................... CAACTTGAAAATTAGTAAAACATACTATAT 130089 36 100.0 30 .................................... GCTAAACAAAAAGCTGAAGCAGAACGCCTA 130155 36 100.0 30 .................................... TGCTACACCTAAAACCAATTCACTGCGAGA 130221 36 100.0 30 .................................... TGGGAAATTGGGAGAAGATTACAACACGTC 130287 36 100.0 30 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCT 130353 36 100.0 30 .................................... CCTATTATATACACATTTAAAACGACACTA 130419 36 100.0 30 .................................... CGTGTCGCTAAAGCTGCGAGTAAAACCTCT 130485 36 100.0 30 .................................... GAATCCACTTTGTTCTTTATAGTAGTTAGT 130551 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 130617 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 130683 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 130749 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 130815 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 130881 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 130947 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 131013 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 131078 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 131144 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 131210 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 131277 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 131343 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 131409 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 131475 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 131541 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 131607 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 131673 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 131739 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 131805 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 131871 36 100.0 30 .................................... GAGCGCCCTCTATTACTTAACATAAACGGT 131937 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 132003 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 132069 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 132135 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 132201 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 132267 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 132333 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 132399 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 132465 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 132530 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 132595 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 132661 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 132727 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 132793 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 132859 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 75463-75715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBE010000013.1 Streptococcus thermophilus strain FDL19 Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 75463 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 75535 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 75611 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 75686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //