Array 1 1-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZRR01000147.1 Neisseria meningitidis strain Neisseria meningitidis isolate B054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1 29 96.6 39 .........................C... CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGACC 69 29 100.0 43 ............................. ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 141 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 97.7 42 CGTCATTCCCGCGCAGGCGGGAATCTAGA # Left flank : | # Right flank : ACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAGCTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGCAGGCGGGAATCTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 989-3214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZRR01000016.1 Neisseria meningitidis strain Neisseria meningitidis isolate B054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 989 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1055 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1121 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1187 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1253 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1319 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1385 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1463 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1529 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1595 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 1661 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1727 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1793 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1859 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1925 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1991 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 2057 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 2123 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 2189 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2255 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2321 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2387 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2453 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2519 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2585 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2651 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2717 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2783 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2849 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2915 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 2981 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 3047 36 100.0 30 .................................... GTTTTTGTCTCTGACCTTAATCATTTTGCT 3113 36 100.0 30 .................................... CAGTAAACAGTTATCTAGCCCTTACTACAC 3179 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //