Array 1 306712-306194 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFTL01000019.1 Limosilactobacillus oris F0423 ctg1127947904565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 306711 29 96.6 32 ............................C GTGATAGAACGACTGAGCCATCTTATCAATGG 306650 29 100.0 33 ............................. ACCATTTTGCGCACCGGCCTTCTAATCATCATG 306588 29 96.6 32 ............................C AGCCAAGTGCTGCTGATGTGCTTTTAGATTTA 306527 29 100.0 32 ............................. TTGCCGGAACATACCTGGCAAAGTCCCCATCA 306466 29 100.0 32 ............................. GTGTCCCAGCTGGCTTTCATAGTTTGCTGTTG 306405 29 93.1 32 G...........................C TACTTCTCTCATGGGTTTCTCCATCCTCATCA 306344 29 93.1 32 G...........................C TACACCAGCTAAGAATGATGGAACGTCGAATT 306283 29 96.6 32 G............................ TGAAGTTGAGCCAACGCACGATAAAATCTTAT 306222 29 72.4 0 G.............T.......A.CCTAC | ========== ====== ====== ====== ============================= ================================= ================== 9 29 94.3 32 ATATTCCCCATGTACGTGGGGGTGATCCT # Left flank : TCTGCGCAGATTATTTCAATTGGAGCGGTGAAACGAGTAGCTGGGCACACGACAACTTTTTATCGGTTAGTAAAGCTGGAATCGGGCAAGAAAGTGCCGGTGGATATTGCCCGCATGACTGGATTAAATAATGAGCGTTTAGCTGCGGAAGGCGTGTTAGTTAAGGAAGCATTGATAGACTTGCAGGCCTTTACGAAGGGCCTGCCAATTGTTGGTTATAACTTACTTTTTGATGAACGCTTTTTGCAAACTGCAGTTATTAGAACGGGCATTGTTCAGTTTAATAATAAGATGGTAGATGTGTTGCCATATGTTAAGACGACTGATAAGTTTTGCGATAATTATCATTTAACAACTGTCCTAGCCAAGTATGGCGTTAAAAATGAGCAACCACACAATTCATTAGCGGATGCAACAGCGACTATGGAGCTAGTTGATAAACTCATTAAAATTTACGGCTTTCGAATATAAAAACCGCGGCCCATCAGGGATCTTTTAGT # Right flank : ATTTCCAAACAGTCGATGATATAGTTTGAGGAGGAGAGGCATATGCATGATAGAAACTATTACGAGAGGGAATATTTCGACTATAAGAAGTATTCTAAATTCTATAAGGCGATGGTTGAATATTCTATTAAATTTCAAGAACCAGTTATGATGGGATTTCTACCTCCAAGTCTTAAAGAGGTAAAAGATGCCGTAAAAAACGATCAGCCAATTCGTTATAAAGATGATGGAGCGTGGTATTAGCATCAACGTATTCCTTATGTATATGGTAGGGGCGCTGCATTCTTGCGCAGGTCGTCAAGCTGACCATCACGGTCGGTAATCTGCTGTTTTAGACTGTCCCGCTCGCTGGTTAAGCTATCCACCTGCTCTTTAAGCGGGTTGACTTCTTTACCGTAAGCTGTCATCACAGACGCAATCTGGTCATCGTTCAAACCGGGTTCCTTTAAATCTTCACGTTTCATTGCACTCGCTCCTTTACGTTAGTTGTTAACGGAGTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTCCCCATGTACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 319766-318574 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFTL01000019.1 Limosilactobacillus oris F0423 ctg1127947904565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 319765 29 100.0 32 ............................. ATCGGTTTAGCGGATTGGGCAAGTTGGAAAGA 319704 29 96.6 33 ............................T CTTCCTCGTCCTGGATCATCCGTTTAAGTTTCT 319642 29 100.0 32 ............................. TTACTAGCTATGAAGCGGTACCTTTGGTTTAA 319581 29 100.0 32 ............................. ACCCCCGTAAGGTCAATCGAACCGTCAATGTG 319520 29 96.6 33 ............................T TTTCTTCGGCGGTAATAGGGTCACCACAGGCAA 319458 29 100.0 32 ............................. GATAAGACAAAGCAACAATCTTGACACTAATA 319397 29 96.6 32 ............................T TAATGGTCGTTTATTAATCGTTGGAATTACGC 319336 29 100.0 33 ............................. TATCTGCGGCGCTAGTGAGCAATTGCTAGTGTA 319274 29 96.6 32 ............................T TAGTTAACTTGCTAGAAGCTAAGTCTGAAATG 319213 29 100.0 32 ............................. TTTTTCATGGCATATCACCACACCGCCTTTCT 319152 29 100.0 32 ............................. ATGGCAAACGAGCTTAGACGAGCTGTTATAGG 319091 29 100.0 32 ............................. TGAACGCCCACCAGATTCGCTCATGATTGTCT 319030 29 96.6 33 ............................T GGGCCTCAATATTTGACCACCAGTGATGGGGTT 318968 29 100.0 32 ............................. TGTCACAACAACGATTACGGTTGATTGAGGTG 318907 29 100.0 32 ............................. GTACTACTACTCTGCGGTTGAGAGGTTGTTTG 318846 29 100.0 32 ............................. ATCACTTCACCATTAGTCCTGGTGTAACCATA 318785 29 96.6 32 ............................T CACTATATTCATGGGACGCAGAGGGGAATTAC 318724 29 100.0 32 ............................. AATGGCAATTACACCATTAATCGACTTAAAAG 318663 29 96.6 32 ............................T TGATAGGTCGGTGGCGTGCCAGCCGGCTAATT 318602 29 86.2 0 ........A....G..........G...T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GTATTCCCCATGTATATGGGGGTGATCCC # Left flank : TTGCTATCTCCAGCATATGAAAAAGAGACGACTAGCATATGGTTATCGCAATTTCAGCATAGTTTTCCGGCATTTGTCGATCGTTTTCAGCTTAATTGCTTTGTCGATGAAGAATATAACATTTTAGATATTGTCAGCAAGCAAACGAAAATTATTGAAAGATTTCCTGATAGAAAAGCGGTAGCGGCGTCGGTTCCAGCCTATATTGATTCATTAATTTCTTTAATTCAACAAGGATATTTTGATTAGGCAGAATGTATTCTTGAAAGAATAAATATTAAGTCTTTTCTCTGGTAATTGGATGTATTAAGAACTAATGATAGGAGCTGAACCTAAGGAAGCTGTTTGAATGATGATTCAGTTTATGTATTATTCAAATTTCAAATAGAAAAATAAGAGTTCATAGAAGTTAACTAAGAAGGGGCGTATCAGATTAGCAAACTAAATAAAAATTGAGGTATACTTGGAGCAAAAGCCTGATTTGTTGGTAATCTTTTAGT # Right flank : AACCAGCTTCAATGGTTAGCGACTCGTTCTGGGCAGCTCTATGCTGAAATGCAAAAGGAAGTCGACAGTCTTGACATTCAACGGGCTAGCCAGGACGCTCAGAAGCTGGTTGGCCGTGCTAATCAGTTACGTGGTCAAGGCCACCGTGTTACTTATGGTGACTATACGTCCGAAGAGAACGCCCGAATGCGGCTGTACAATGCCACCATGCGGATCAACCGCCTGGAATTCTTGAAGTCCGAAGTTGGTCTTGAACTGACGCGGTTGACCGGCGAGCTTAACGCTTCACTGGGGCTAAAGCTCACTGATGATGCCCGTAAGGAATTCAAACGTCAGGCTGGTATCATAGGCGAGCAACTGGGTAATGCGAAGACCTGGACGTCATTTCAACCACAGGTACTGGTGATGAAGAACGTTCAGGGTGGTAATTGGTCCCAGCGCTTGTGGAAGAACCAGGACGTCCTGAAGGCCAATCTTGACGCTGTGCTGTCAGCTGGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //