Array 1 163336-161948 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAWI01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 662ST scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163335 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163274 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163213 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163152 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163091 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163029 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162968 29 93.1 4 ...........................NN NNNN Deletion [162936] 162935 29 86.2 32 NNNN......................... CCGCTGACGCACTGGATCAACCTGACGCAACG 162874 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162813 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162752 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162691 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162630 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162569 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162508 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162446 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162343 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162282 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162221 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162160 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162099 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162038 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161977 29 96.6 0 A............................ | A [161950] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 98.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181510-179468 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAWI01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 662ST scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181509 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181448 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181387 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181326 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181265 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 181204 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181143 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181082 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181021 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180960 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180899 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180838 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180777 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180716 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180655 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180594 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180533 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180472 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180411 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180350 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180289 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180228 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180167 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180106 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180045 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179983 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179922 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179861 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179800 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179739 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179678 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179617 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179556 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179495 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //