Array 1 56476-56623 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCUP01000068.1 Vibrio breoganii strain 10N.286.49.E9 10N.286.49.E9_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56476 28 100.0 32 ............................ TGACGCAATTTGGCTTCTTTATCAGCAATCTT 56536 28 100.0 32 ............................ CTCACGCTAACCTTATTTGCCTAGATAACTCA 56596 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGTCCTGCCGCATAGGCAGCTAAGAAA # Left flank : TCATTGATGACAAAAGAAGGAATATTTGAGATCTTTAATGTTTGTGAAGTGCCTGAAAATTTGGGTGAAGTAAGGTTTATTCGCAACCAAACGATTGAAAAGAATTTCTTAGGCTCAAAGAAACGACGAATTAAACGCAGCATAGCAAGAGCAGAGTTATCAGGGGGTGAACAGCCATTGCCTGTGGCTGTGGAAGAGCGTGTCGTTGACCACTTTCATAGAGTACCAGTTTCAAGCGGTTCTTCAGGGCAAGATTATATTCTATTTACTCAAAAAGAGTTTGCAGAGGAGCGTACAGCCCGAAGCTTCAATAGTTATGGCTTAGCAACGAACGAAGAAAGAAGAGGAACGGTACCTGACTTACGTTTTTAACCCTTTTTTGAAGACTCTTTTTCAGTCTCGTAAAAACAAAGACTTACAGGGCAGTAAATAAAAATGGTATTTTGGTAGATTGTGATTTAAAGCACGTAGAATCAAATGGTTGGTGACTATAGTTAATA # Right flank : TAGGTCTGGAAGAAAGCAACCATCCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTCTAGGCTTGGTGGTTTTTTGTTTTTTGGCTTACTTTCGGTGTGAGCTCTAGAGCATTAGGTCTAACGTGTTTCTGCCCCATTGTGTGTTTCGATCCCACTAAGCGCTATCGACTAACATAACTTTTTCCAAAATAAAACTAATACAAAAAGTCAATTACTATATACCAGACTGGCTCAACTCATTAGTTGAAATTCACTAAACTTAGCAAAATTAGGTGTGTTTGAACTACCACTAAAGGTAAAAAGCATAAGTCCTTTTGCTTGGCCGTTTAATGTCTTCGCAGATCCAATGACTTGCCAAGAGCGTTTTTGATTACATCCCAAGAATGCAGTGATAGTACCATCATTTTTTTCTATCTTAACTGACGCTGTCTTGCCTTCAAATGTGCGAAGTTGTTTGATCTCTGGTTGACCATTTTGCTCGACAACAAAGACCAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11794-11967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCUP01000075.1 Vibrio breoganii strain 10N.286.49.E9 10N.286.49.E9_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 11794 36 100.0 33 .................................... TATAACTGAGCATCTTCGCGTGGATACTTTCAG 11863 36 100.0 33 .................................... AATCCCGCGGGTCTCATTGTCGACAATGAACAC 11932 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 3 36 100.0 34 GTCTGAAACTCGCCCTGTTCTTAAAGGGATTATGAC # Left flank : TTGAACTAGGACGACTCGATTTATACGACCAAACTATTAGTTCAGAGAAAGCTGTGGAGCTTTATTTGATGATGTTTAAGGCGCTCTTGATTCTCTTTGGGTTTTACTTATTTTCAATATGCCTTGAACGTTTGGCGATTCGCTATGCCCTCTATAAATACAATCAAGTGAGGCAGGAAAATGAAAATCTCACAAATTAAACCTATCCCTAATCTGTCCGATATTGATGTGACCGTGACCACAGCTGGGCTTATTTTAACCTAAGGAATAAGCCCCCAAGGCACCAAAATATTCAATGTGATAATCAACCTTAGGCAAGGTTCACAAATTCAGTGAACTACAGCTCAAAAAGCATTTAAAACAGTAGCTTAAAGCAGGATTATTGAGTTAAGATACCCCACGGTCAAGCAACGAAATAATCGTCAAGTTTATGAATTTGCAAATCTCCGATAAGCCTAGTTTTAATCTATTGATTTATAAGGTTTTTTAGGTTGCTTGCT # Right flank : CCAATCACCTTTAATACCCACAACAAGCGAACGTCTGAAATTCGCTCTGTTTTTATCCACTCCTCTATTCTGACCTTATGGCTTATGGCTACAAATGTGATCTCCCCCTAAGTCAAAAAGTAAAAAGTTATCAGCATAAAAAAAGCCGACTTTTAAAGTCGGCCTTAGTGGCAAGCACTTGGTTAATTTACCTATACCTAAAGGTAATATTGGATGATTTTATCTTCAGCCCCTTCGTCTGAATGGGTTTCTTTAGTTCTTTAATCTTAATGTTGTTTACTTCCTGGATTTTATAGTGCCCACCAAACCTACTACCTAACTCACCTTCGATAGCGCCATTCACTTCAGAGAGTAACCTTACCCACAGACTGTACTGCTTCTTATGGACCACCGACTGGCTTGTTAAACCGTCAATATCGAAAAGGTCTTGTGCCCCTTTTCTTTGAAATAGGAATATATCACCTTGATACCGCTCGTCGATTAAATCCAGCAAATGATCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAACTCGCCCTGTTCTTAAAGGGATTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //