Array 1 163081-160550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOC01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163080 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163019 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162958 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162897 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162836 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162775 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162714 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162653 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162592 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162531 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162470 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162409 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162348 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162287 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162226 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162165 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162104 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162043 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161982 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161921 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161860 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161799 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161738 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161677 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161616 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161555 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161494 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161433 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161372 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161311 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161250 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161189 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161128 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161067 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161006 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160945 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160884 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160823 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160762 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160701 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160640 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160579 29 93.1 0 A...........T................ | A [160552] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181081-179588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOC01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181080 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181019 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180958 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180897 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180836 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180775 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180714 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180653 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180592 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180531 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180470 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180409 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180348 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180287 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180226 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180165 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180104 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180042 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179981 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179920 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179859 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179798 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179737 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179676 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179615 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //