Array 1 28762-27877 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJT01000032.1 Salmonella enterica subsp. enterica serovar Wilhelmsburg strain 103bo NODE_22_length_46341_cov_7.896923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28761 29 100.0 32 ............................. CTGCGTGTCGCCCCACTGCACCGCGTCGCGCA 28700 29 100.0 32 ............................. AGGAGCTATTTTCTGTACTGATGGACCAACGC 28639 29 100.0 32 ............................. ACTGGACTGAGCAGGTATCTGTCAGGTCTGAG 28578 29 100.0 32 ............................. CAGGTAAGGGCATTTGTTCGCGCTTTAACCGA 28517 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 28456 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAATA 28395 29 100.0 32 ............................. TTGCGGTCGGTGATTTGGGCTCGTGATAAGGG 28334 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 28273 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 28212 29 100.0 32 ............................. GAGAGGCCGATTCAGCAACCAAAAAAGGGAAG 28151 29 100.0 33 ............................. GCGACTCAGGATCTCCAGTGCTACGTGGAGCGC 28089 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 28028 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 27967 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27906 29 93.1 0 A...........T................ | A [27879] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46155-45456 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJT01000032.1 Salmonella enterica subsp. enterica serovar Wilhelmsburg strain 103bo NODE_22_length_46341_cov_7.896923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46154 29 100.0 32 ............................. AACACATTGGCGTAAAAGACGACGTCACTAAC 46093 29 100.0 32 ............................. TGATTGGCCTGTCTCGGATTATGTGGGCTATT 46032 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 45971 29 100.0 32 ............................. CGGCAGCGACCGCCGAGGCCGCGCAACAGCTA 45910 29 100.0 32 ............................. CGATTTATGTAAAGGGTGGCCTGGAAGGGGAT 45849 29 100.0 32 ............................. ACCCGGCCGGATGGGTCGGTGTTTGCCCCTGT 45788 29 100.0 32 ............................. AGTTACGGTATCAGGACGAACAAACACTCTCT 45727 29 100.0 32 ............................. ATTGGATTGTATTCTATACTTTTTAGAATAAC 45666 29 100.0 32 ............................. AGTTTCACCATTAACAGCTCTCAACTTAACCC 45605 29 100.0 32 ............................. GCACTTAAGCCAGTGTTCGCTTGCTTCTACCC 45544 29 100.0 32 ............................. TTGATACGTAGTTTGGCTGAATCTTCCAGAAA 45483 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGTTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGAGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGCATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //