Array 1 8579-9472 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALMD01000015.1 Streptococcus suis YS16 Contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8579 36 100.0 30 .................................... TTCTTTCAGCGTACCGACAGATGATTTGAA 8645 36 100.0 30 .................................... ATGTTGAGGTCTTCCCGCGTCTCGTCTGTG 8711 36 100.0 30 .................................... AGTTAAGGCTGCAGCGGCAGAGTTCCAAGA 8777 36 100.0 30 .................................... GCAATTACTAACGGACCAAATGTTACAATG 8843 36 100.0 30 .................................... CAATCGAAGCAGTAAACAAACAGGAGCGCA 8909 36 100.0 30 .................................... CGCTACTGCATTGCAGTACATGAAGGACAA 8975 36 100.0 30 .................................... TGTTCCATTTGTAACGGTTCAAACGGTTCA 9041 36 100.0 30 .................................... GAACCAACAGCGGAAAACCTTGTAGGAAGT 9107 36 100.0 30 .................................... ATTTTACATTATTTTGTAAGATATTCTTTA 9173 36 100.0 30 .................................... TAGAGGCCACTAAGTCTAGACTCGATATTA 9239 36 100.0 30 .................................... GCGTCCGTCATGATCACCTTGTCGTAGGAC 9305 36 100.0 30 .................................... ATATATGTTTAACCAAAAAACTTTGGAAAA 9371 36 100.0 30 .................................... CCATCTGGATGCCTATGCTCTAAAATTCGA 9437 35 88.9 0 .........................A.-.A.....G | T [9470] ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACTTGCATTTATATCATTGTTTTAATTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //